RNA–Protein interactions for RNA: ENST00000439886.5

SMPD4-209, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 3,371 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-209ENST00000439886 CAPS2Q9BXY5 557 aa13.16□□□□□ -0.3
SMPD4-209ENST00000439886 CSRNP2Q9H175 543 aa13.16□□□□□ -0.3
SMPD4-209ENST00000439886 SAR1BQ9Y6B6 198 aa13.16□□□□□ -0.3
SMPD4-209ENST00000439886 SH3TC1Q8TE82 1336 aa13.16□□□□□ -0.3
SMPD4-209ENST00000439886 SALL1Q9NSC2 1324 aa13.16□□□□□ -0.3
SMPD4-209ENST00000439886 MFAP3LO75121 409 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 PPP6R2O75170 966 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 GSCP56915 257 aaPredicted RBP13.15□□□□□ -0.3
SMPD4-209ENST00000439886 ZNF790Q6PG37 636 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 NEO1Q92859 1461 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 NEDD4P46934 1319 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 IDEP14735 1019 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 PLCD1P51178 756 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 ANTXR2P58335 489 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 RNASE9P60153 205 aaKnown RBP13.15□□□□□ -0.3
SMPD4-209ENST00000439886 CTDSPL2Q05D32 466 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 ZNF174Q15697 407 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 GBP6Q6ZN66 633 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 CTCFLQ8NI51 663 aaPredicted RBP13.15□□□□□ -0.3
SMPD4-209ENST00000439886 ITFG2Q969R8 447 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 ERICH2A1L162 156 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 FRMD3A2A2Y4 597 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 GUCY1A2P33402 732 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 TBX2Q13207 712 aaPredicted RBP13.15□□□□□ -0.3
SMPD4-209ENST00000439886 NR1I3Q14994 352 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 AP1ARQ63HQ0 302 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 NOSTRINQ8IVI9 506 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 IP6K1Q92551 441 aa13.15□□□□□ -0.3
SMPD4-209ENST00000439886 A2ML1A8K2U0 1454 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 EXOC5O00471 708 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 ATP1A1P05023 1023 aaKnown RBP13.14□□□□□ -0.31
SMPD4-209ENST00000439886 CXCR5P32302 372 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 PDCLQ13371 301 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 AMOTQ4VCS5 1084 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 CYP26C1Q6V0L0 522 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.14□□□□□ -0.31
SMPD4-209ENST00000439886 CYB5R4Q7L1T6 521 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 TMTC1Q8IUR5 882 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 BORCS6Q96GS4 357 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 PANX2Q96RD6 677 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 EPN1Q9Y6I3 576 aaPredicted RBP13.14□□□□□ -0.31
SMPD4-209ENST00000439886 CYP27A1Q02318 531 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 APOA5Q6Q788 366 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 ARHGEF25Q86VW2 580 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 HNRNPLLQ8WVV9 542 aaKnown RBP13.14□□□□□ -0.31
SMPD4-209ENST00000439886 IFT81Q8WYA0 676 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 SEC31BQ9NQW1 1179 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 ZNHIT6Q9NWK9 470 aaKnown RBP13.14□□□□□ -0.31
SMPD4-209ENST00000439886 TMEM131LA2VDJ0 1609 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 KIF13AQ9H1H9 1805 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 PPARAQ07869 468 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 PTPAQ15257 358 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 ENOX2Q16206 610 aaKnown RBP13.14□□□□□ -0.31
SMPD4-209ENST00000439886 SPATA1Q5VX52 437 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 JAKMIP2Q96AA8 810 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 SELENOOQ9BVL4 669 aa13.14□□□□□ -0.31
SMPD4-209ENST00000439886 USP31Q70CQ4 1352 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 KIF3CO14782 793 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 IL15P40933 162 aaPredicted RBP13.13□□□□□ -0.31
SMPD4-209ENST00000439886 SCARF1Q14162 830 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 MSANTD4Q8NCY6 345 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 XAGE2Q96GT9 111 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 CTAGE1Q96RT6 745 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 HPSEQ9Y251 543 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 MYO1FO00160 1098 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 HNRNPH1P31943 449 aaKnown RBP13.13□□□□□ -0.31
SMPD4-209ENST00000439886 CCDC96Q2M329 555 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 NAPBQ9H115 298 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 HPCAL4Q9UM19 191 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 PREX1Q8TCU6 1659 aa13.13□□□□□ -0.31
SMPD4-209ENST00000439886 FAM205CA6NFA0 338 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 MINDY4BA8MYZ0 360 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 PRDM1O75626 825 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 GYPCP04921 128 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 CD44P16070 742 aaKnown RBP13.12□□□□□ -0.31
SMPD4-209ENST00000439886 TRIM21P19474 475 aaKnown RBP13.12□□□□□ -0.31
SMPD4-209ENST00000439886 HPDP32754 393 aaPredicted RBP13.12□□□□□ -0.31
SMPD4-209ENST00000439886 ERVK-24P63145 666 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 METTL24Q5JXM2 366 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 MB21D2Q8IYB1 491 aaPredicted RBP13.12□□□□□ -0.31
SMPD4-209ENST00000439886 SH2D3CQ8N5H7 860 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 IQUBQ8NA54 791 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 OXER1Q8TDS5 423 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 UBAC1Q9BSL1 405 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.12□□□□□ -0.316e-7■■■■□ 20.5
SMPD4-209ENST00000439886 NBPF3Q9H094 633 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 RAB21Q9UL25 225 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 PHF8Q9UPP1 1060 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 LUC7L2Q9Y383 392 aaKnown RBP13.12□□□□□ -0.31
SMPD4-209ENST00000439886 IRAK1P51617 712 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 CDR1P51861 262 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 PSMD2Q13200 908 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 ARMC3Q5W041 872 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 ANKRD13CQ8N6S4 541 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 NAA15Q9BXJ9 866 aaKnown RBP13.12□□□□□ -0.31
SMPD4-209ENST00000439886 SMARCAL1Q9NZC9 954 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 ZMYM6O95789 1325 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 CLTCQ00610 1675 aaKnown RBP13.12□□□□□ -0.31
SMPD4-209ENST00000439886 KLHL33A6NCF5 533 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 EYA2O00167 538 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms