RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 MLKLQ8NB16 471 aa18.76■□□□□ 0.59
CLCNKA-203ENST00000439316 NLRP3Q96P20 1036 aa18.76■□□□□ 0.59
CLCNKA-203ENST00000439316 NOL10Q9BSC4 688 aaKnown RBP18.76■□□□□ 0.59
CLCNKA-203ENST00000439316 NACAP1Q9BZK3 213 aa18.76■□□□□ 0.59
CLCNKA-203ENST00000439316 FANCGO15287 622 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 ZSCAN12O43309 604 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 PRR29P0C7W0 189 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 MORC3Q14149 939 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 CRACR2BQ8N4Y2 399 aaPredicted RBP18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 TRIML1Q8N9V2 468 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 ENOX1Q8TC92 643 aaKnown RBP18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 CDC5LQ99459 802 aaKnown RBP18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 DACH1Q9UI36 760 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 CCDC196A0A1B0GTZ2 297 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 TDO2P48775 406 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 FMR1Q06787 632 aaKnown RBP eCLIP18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 GOLGA8FQ08AF8 430 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 GOLGA8DPQ0D2H9 430 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 AKT1S1Q96B36 256 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 SRRTQ9BXP5 876 aaKnown RBP18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 SERTAD1Q9UHV2 236 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 SRPRBQ9Y5M8 271 aaKnown RBP18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 SLC4A4Q9Y6R1 1079 aa18.75■□□□□ 0.59
CLCNKA-203ENST00000439316 POLR2DO15514 142 aaKnown RBP18.74■□□□□ 0.59
CLCNKA-203ENST00000439316 RRP12Q5JTH9 1297 aaKnown RBP18.74■□□□□ 0.59
CLCNKA-203ENST00000439316 TMTC2Q8N394 836 aa18.74■□□□□ 0.59
CLCNKA-203ENST00000439316 ZKSCAN3Q9BRR0 538 aa18.74■□□□□ 0.59
CLCNKA-203ENST00000439316 PCDHB6Q9Y5E3 794 aa18.74■□□□□ 0.59
CLCNKA-203ENST00000439316 VWA3AA6NCI4 1184 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 SNAP23O00161 211 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 ACTN4O43707 911 aaKnown RBP18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 PTPN21Q16825 1174 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 CNBD1Q8NA66 436 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 SMARCE1Q969G3 411 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 RNF41Q9H4P4 317 aaPredicted RBP18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 CEP131Q9UPN4 1083 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 PPP2R2CQ9Y2T4 447 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 NFE2L3Q9Y4A8 694 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 ERICH2A1L162 156 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 SLFN14P0C7P3 912 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 NR5A1Q13285 461 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 ANKRD18AQ8IVF6 992 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 ZNF654Q8IZM8 581 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 SPATA20Q8TB22 786 aa18.73■□□□□ 0.59
CLCNKA-203ENST00000439316 TM4SF1P30408 202 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 CLCN6P51797 869 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 ARHGAP29Q52LW3 1261 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 SPECC1LQ69YQ0 1117 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 KANK3Q6NY19 840 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 FANCBQ8NB91 859 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 CELF1Q92879 486 aaKnown RBP18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 BAG1Q99933 345 aaPredicted RBP18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 TOMM22Q9NS69 142 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 PARP3Q9Y6F1 533 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 TNRC6CQ9HCJ0 1690 aaKnown RBP18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 RGPD3A6NKT7 1758 aaPredicted RBP18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 RGPD4Q7Z3J3 1758 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 GOLGA6L9A6NEM1 432 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 STX10O60499 249 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 IGSF3O75054 1194 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 TADA3O75528 432 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 COL23A1Q86Y22 540 aaPredicted RBP18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 TC2NQ8N9U0 490 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 OXER1Q8TDS5 423 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 MED15Q96RN5 788 aa18.72■□□□□ 0.59
CLCNKA-203ENST00000439316 MYH6P13533 1939 aa18.71■□□□□ 0.59
CLCNKA-203ENST00000439316 PLCD1P51178 756 aa18.71■□□□□ 0.59
CLCNKA-203ENST00000439316 CHRNDQ07001 517 aa18.71■□□□□ 0.59
CLCNKA-203ENST00000439316 PPARAQ07869 468 aa18.71■□□□□ 0.59
CLCNKA-203ENST00000439316 PRR5LQ6MZQ0 368 aa18.71■□□□□ 0.59
CLCNKA-203ENST00000439316 GRAMD1CQ8IYS0 662 aa18.71■□□□□ 0.59
CLCNKA-203ENST00000439316 SERPINB2P05120 415 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 ERCC5P28715 1186 aaPredicted RBP18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 BCAMP50895 628 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 BMS1Q14692 1282 aaKnown RBP18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 SEC23AQ15436 765 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 TERF2Q15554 542 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 TRMT44Q8IYL2 757 aaKnown RBP18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 CMTR1Q8N1G2 835 aaKnown RBP18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 RNF26Q9BY78 433 aaPredicted RBP18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 CSRNP2Q9H175 543 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 BSDC1Q9NW68 430 aaPredicted RBP18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 URI1O94763 535 aaPredicted RBP18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 EN1Q05925 392 aaPredicted RBP18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 HSP90AA4PQ58FG1 418 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 CCDC82Q8N4S0 544 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 MIGA1Q8NAN2 632 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 UBXN4Q92575 508 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 SHISA4Q96DD7 197 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 RAI14Q9P0K7 980 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 ANAPC4Q9UJX5 808 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 FHOD1Q9Y613 1164 aa18.7■□□□□ 0.58
CLCNKA-203ENST00000439316 EFCAB8A8MWE9 144 aa18.69■□□□□ 0.58
CLCNKA-203ENST00000439316 CDK11BP21127 795 aaKnown RBP18.69■□□□□ 0.58
CLCNKA-203ENST00000439316 DDR1Q08345 913 aa18.69■□□□□ 0.58
CLCNKA-203ENST00000439316 PPP2R5BQ15173 497 aa18.69■□□□□ 0.58
CLCNKA-203ENST00000439316 CT47A1Q5JQC4 288 aaPredicted RBP18.69■□□□□ 0.58
CLCNKA-203ENST00000439316 USP49Q70CQ1 688 aa18.69■□□□□ 0.58
CLCNKA-203ENST00000439316 ZNF771Q7L3S4 317 aaPredicted RBP18.69■□□□□ 0.58
CLCNKA-203ENST00000439316 MNS1Q8NEH6 495 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms