RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 TIAF1O95411 115 aa8.57□□□□□ -1.04
USP54-206ENST00000433394 CST3P01034 146 aaPredicted RBP8.57□□□□□ -1.04
USP54-206ENST00000433394 ACRP10323 421 aa8.57□□□□□ -1.04
USP54-206ENST00000433394 HOXB4P17483 251 aaPredicted RBP8.57□□□□□ -1.04
USP54-206ENST00000433394 PMS1P54277 932 aaKnown RBP8.57□□□□□ -1.04
USP54-206ENST00000433394 MICAL1Q8TDZ2 1067 aa8.57□□□□□ -1.04
USP54-206ENST00000433394 ISL2Q96A47 359 aa8.57□□□□□ -1.04
USP54-206ENST00000433394 SLC6A18Q96N87 628 aa8.57□□□□□ -1.04
USP54-206ENST00000433394 IPO9Q96P70 1041 aaKnown RBP8.57□□□□□ -1.04
USP54-206ENST00000433394 ACTL7BQ9Y614 415 aa8.57□□□□□ -1.04
USP54-206ENST00000433394 B2RBV5 119 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 F8W735 103 aaPredicted RBP8.56□□□□□ -1.04
USP54-206ENST00000433394 DNAJA2O60884 412 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 LRIG2O94898 1065 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 RAB6AP20340 208 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 RNF4P78317 190 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 MAP7Q14244 749 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 TCEAL1Q15170 157 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 ZYXQ15942 572 aaKnown RBP8.56□□□□□ -1.04
USP54-206ENST00000433394 C2orf27AQ580R0 203 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 PRAMEF13Q5VWM6 474 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 GIMAP7Q8NHV1 300 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 ZCRB1Q8TBF4 217 aaKnown RBP8.56□□□□□ -1.04
USP54-206ENST00000433394 DPH2Q9BQC3 489 aaPredicted RBP8.56□□□□□ -1.04
USP54-206ENST00000433394 FANCLQ9NW38 375 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 LRP2BPQ9P2M1 347 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 SUCOQ9UBS9 1254 aaKnown RBP8.56□□□□□ -1.04
USP54-206ENST00000433394 PFDN2Q9UHV9 154 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 SBNO2Q9Y2G9 1366 aa8.56□□□□□ -1.04
USP54-206ENST00000433394 LTBP3Q9NS15 1303 aa8.55□□□□□ -1.04
USP54-206ENST00000433394 ZC3H12BQ5HYM0 836 aaKnown RBP8.55□□□□□ -1.04
USP54-206ENST00000433394 HEATR6Q6AI08 1181 aaKnown RBP8.55□□□□□ -1.04
USP54-206ENST00000433394 CCDC144CPQ8IYA2 1237 aa8.55□□□□□ -1.04
USP54-206ENST00000433394 SYNPOQ8N3V7 929 aa8.55□□□□□ -1.04
USP54-206ENST00000433394 C2CD4AQ8NCU7 369 aaPredicted RBP8.55□□□□□ -1.04
USP54-206ENST00000433394 LENG1Q96BZ8 264 aaPredicted RBP8.55□□□□□ -1.04
USP54-206ENST00000433394 SCARF2Q96GP6 870 aaPredicted RBP8.55□□□□□ -1.04
USP54-206ENST00000433394 APBA2Q99767 749 aa8.55□□□□□ -1.04
USP54-206ENST00000433394 GBP3Q9H0R5 595 aa8.55□□□□□ -1.04
USP54-206ENST00000433394 FBRSQ9HAH7 460 aa8.55□□□□□ -1.04
USP54-206ENST00000433394 FAM105AQ9NUU6 356 aa8.55□□□□□ -1.04
USP54-206ENST00000433394 PCDHB10Q9UN67 800 aa8.55□□□□□ -1.04
USP54-206ENST00000433394 ANKRD34BA5PLL1 514 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 SUSD5O60279 629 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 ARHGEF15O94989 841 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 NEFMP07197 916 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 RXRBP28702 533 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 POLR2BP30876 1174 aaKnown RBP8.54□□□□□ -1.04
USP54-206ENST00000433394 ETV3P41162 512 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 GRIK4Q16099 956 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 NKG7Q16617 165 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 UVSSAQ2YD98 709 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 SV2CQ496J9 727 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 ARMCX6Q7L4S7 300 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 AGGF1Q8N302 714 aaeCLIP8.54□□□□□ -1.04
USP54-206ENST00000433394 ZSWIM2Q8NEG5 633 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 XAGE3Q8WTP9 111 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 PPP1R14AQ96A00 147 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 SLC26A8Q96RN1 970 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 MKRN2Q9H000 416 aaKnown RBP8.54□□□□□ -1.04
USP54-206ENST00000433394 GSX1Q9H4S2 264 aaPredicted RBP8.54□□□□□ -1.04
USP54-206ENST00000433394 ZMYM5Q9UJ78 669 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 PRKAB1Q9Y478 270 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 DAGLAQ9Y4D2 1042 aa8.54□□□□□ -1.04
USP54-206ENST00000433394 CYP7A1P22680 504 aa8.53□□□□□ -1.04
USP54-206ENST00000433394 SLBPQ14493 270 aaKnown RBP eCLIP8.53□□□□□ -1.04
USP54-206ENST00000433394 PLEKHG4Q58EX7 1191 aa8.53□□□□□ -1.04
USP54-206ENST00000433394 ALYREFQ86V81 257 aaKnown RBP8.53□□□□□ -1.04
USP54-206ENST00000433394 LILRB2Q8N423 598 aa8.53□□□□□ -1.04
USP54-206ENST00000433394 SGSM3Q96HU1 749 aa8.53□□□□□ -1.04
USP54-206ENST00000433394 TP53P04637 393 aaPredicted RBP8.52□□□□□ -1.05
USP54-206ENST00000433394 NTF4P34130 210 aa8.52□□□□□ -1.05
USP54-206ENST00000433394 TCEA2Q15560 299 aa8.52□□□□□ -1.05
USP54-206ENST00000433394 LONRF2Q1L5Z9 754 aa8.52□□□□□ -1.05
USP54-206ENST00000433394 SHISA2Q6UWI4 295 aa8.52□□□□□ -1.05
USP54-206ENST00000433394 C16orf86Q6ZW13 317 aa8.52□□□□□ -1.05
USP54-206ENST00000433394 ADAT2Q7Z6V5 191 aaKnown RBP8.52□□□□□ -1.05
USP54-206ENST00000433394 CRACR2BQ8N4Y2 399 aaPredicted RBP8.52□□□□□ -1.05
USP54-206ENST00000433394 BAHD1Q8TBE0 780 aaPredicted RBP8.52□□□□□ -1.05
USP54-206ENST00000433394 SPATA9Q9BWV2 254 aa8.52□□□□□ -1.05
USP54-206ENST00000433394 TMEM260Q9NX78 707 aa8.52□□□□□ -1.05
USP54-206ENST00000433394 CCDC163A0A0D9SF12 145 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 ESYT3A0FGR9 886 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 PPM1BO75688 479 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 CDK11BP21127 795 aaKnown RBP8.51□□□□□ -1.05
USP54-206ENST00000433394 PREPP48147 710 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 ZNF662Q6ZS27 426 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 SPATC1Q76KD6 591 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 UTP4Q969X6 686 aaKnown RBP8.51□□□□□ -1.05
USP54-206ENST00000433394 FEZ1Q99689 392 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 CDC6Q99741 560 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 MIPEPQ99797 713 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 FAM86C1Q9NVL1 165 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 CEP131Q9UPN4 1083 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 SUGT1Q9Y2Z0 365 aa8.51□□□□□ -1.05
USP54-206ENST00000433394 NOP56O00567 594 aaKnown RBP8.5□□□□□ -1.05
USP54-206ENST00000433394 UBOX5O94941 541 aa8.5□□□□□ -1.05
USP54-206ENST00000433394 SLC10A6Q3KNW5 377 aa8.5□□□□□ -1.05
USP54-206ENST00000433394 TDRD10Q5VZ19 366 aaKnown RBP8.5□□□□□ -1.05
USP54-206ENST00000433394 MRM1Q6IN84 353 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms