RNA–Protein interactions for RNA: ENST00000430071.6

UBE3D-204, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 5

Gene UBE3D, Length 1,352 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-204ENST00000430071 UBE3CQ15386 1083 aa20.4■□□□□ 0.86
UBE3D-204ENST00000430071 FAM110CQ1W6H9 321 aa20.4■□□□□ 0.86
UBE3D-204ENST00000430071 CENPQQ7L2Z9 268 aaPredicted RBP20.4■□□□□ 0.86
UBE3D-204ENST00000430071 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.4■□□□□ 0.86
UBE3D-204ENST00000430071 GINM1Q9NU53 330 aa20.4■□□□□ 0.86
UBE3D-204ENST00000430071 TMOD4Q9NZQ9 345 aa20.4■□□□□ 0.86
UBE3D-204ENST00000430071 ELNP15502 786 aa20.39■□□□□ 0.85
UBE3D-204ENST00000430071 PDE4AP27815 886 aa20.39■□□□□ 0.85
UBE3D-204ENST00000430071 HOXA7P31268 230 aaPredicted RBP20.39■□□□□ 0.85
UBE3D-204ENST00000430071 GPATCH3Q96I76 525 aa20.39■□□□□ 0.85
UBE3D-204ENST00000430071 TMEM106CQ9BVX2 250 aa20.39■□□□□ 0.85
UBE3D-204ENST00000430071 ZNFX1Q9P2E3 1918 aaKnown RBP20.39■□□□□ 0.85
UBE3D-204ENST00000430071 TNPO2O14787 897 aaKnown RBP20.38■□□□□ 0.85
UBE3D-204ENST00000430071 CLEC10AQ8IUN9 316 aa20.38■□□□□ 0.85
UBE3D-204ENST00000430071 PI4K2BQ8TCG2 481 aa20.38■□□□□ 0.85
UBE3D-204ENST00000430071 OSBP2Q969R2 916 aa20.38■□□□□ 0.85
UBE3D-204ENST00000430071 STAP2Q9UGK3 403 aa20.38■□□□□ 0.85
UBE3D-204ENST00000430071 COL11A1P12107 1806 aaPredicted RBP20.38■□□□□ 0.85
UBE3D-204ENST00000430071 A0A1W2PRG0 241 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 USP17L12C9JPN9 530 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 USP17L21D6R901 530 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 GCLCP48506 637 aaPredicted RBP20.37■□□□□ 0.85
UBE3D-204ENST00000430071 PDE1AP54750 535 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 HERVK_113P62684 666 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 IRX3P78415 501 aaPredicted RBP20.37■□□□□ 0.85
UBE3D-204ENST00000430071 PABPC4Q13310 644 aaKnown RBP eCLIP20.37■□□□□ 0.85
UBE3D-204ENST00000430071 Q3C1V9 767 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 USP17L2Q6R6M4 530 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 KBTBD3Q8NAB2 608 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 RBPJLQ9UBG7 517 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 SLC4A4Q9Y6R1 1079 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 GREB1LQ9C091 1923 aaPredicted RBP20.37■□□□□ 0.85
UBE3D-204ENST00000430071 MYH4Q9Y623 1939 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 TTC41PQ6P2S7 1318 aa20.37■□□□□ 0.85
UBE3D-204ENST00000430071 ADCY3O60266 1144 aa20.36■□□□□ 0.85
UBE3D-204ENST00000430071 KIAA1755Q5JYT7 1200 aa20.36■□□□□ 0.85
UBE3D-204ENST00000430071 C12orf60Q5U649 245 aa20.36■□□□□ 0.85
UBE3D-204ENST00000430071 SHISA4Q96DD7 197 aa20.36■□□□□ 0.85
UBE3D-204ENST00000430071 ATP8A2Q9NTI2 1148 aa20.36■□□□□ 0.85
UBE3D-204ENST00000430071 MORF4L1Q9UBU8 362 aa20.36■□□□□ 0.85
UBE3D-204ENST00000430071 MPHOSPH10O00566 681 aaKnown RBP20.35■□□□□ 0.85
UBE3D-204ENST00000430071 AKR1B1P15121 316 aa20.35■□□□□ 0.85
UBE3D-204ENST00000430071 SIAH1Q8IUQ4 282 aa20.35■□□□□ 0.85
UBE3D-204ENST00000430071 PLEKHM2Q8IWE5 1019 aa20.35■□□□□ 0.85
UBE3D-204ENST00000430071 C12orf42Q96LP6 360 aa20.35■□□□□ 0.85
UBE3D-204ENST00000430071 STRBPQ96SI9 672 aaKnown RBP20.35■□□□□ 0.85
UBE3D-204ENST00000430071 FEZ1Q99689 392 aa20.35■□□□□ 0.85
UBE3D-204ENST00000430071 KIAA1683Q9H0B3 1180 aa20.35■□□□□ 0.85
UBE3D-204ENST00000430071 CABP5Q9NP86 173 aa20.35■□□□□ 0.85
UBE3D-204ENST00000430071 GJD2Q9UKL4 321 aa20.35■□□□□ 0.85
UBE3D-204ENST00000430071 TAOK2Q9UL54 1235 aa20.35■□□□□ 0.85
UBE3D-204ENST00000430071 M0R2C6 588 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 CCL5P13501 91 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 CDK8P49336 464 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 CTR9Q6PD62 1173 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 UNC93B1Q9H1C4 597 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 BIN2Q9UBW5 565 aaPredicted RBP20.34■□□□□ 0.85
UBE3D-204ENST00000430071 GSG1L2A8MUP6 293 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 ERC2O15083 957 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 RNF113AO15541 343 aaKnown RBP20.34■□□□□ 0.85
UBE3D-204ENST00000430071 CNMDO75829 334 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 GLRX3O76003 335 aaKnown RBP20.34■□□□□ 0.85
UBE3D-204ENST00000430071 VCAM1P19320 739 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 ZSCAN25Q6NSZ9 544 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 SEC62Q99442 399 aaKnown RBP20.34■□□□□ 0.85
UBE3D-204ENST00000430071 PAGR1Q9BTK6 254 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 PORCNQ9H237 461 aa20.34■□□□□ 0.85
UBE3D-204ENST00000430071 ALPK3Q96L96 1907 aa20.33■□□□□ 0.84
UBE3D-204ENST00000430071 CATSPERGQ6ZRH7 1159 aa20.33■□□□□ 0.84
UBE3D-204ENST00000430071 SKAP1Q86WV1 359 aa20.33■□□□□ 0.84
UBE3D-204ENST00000430071 STK11IPQ8N1F8 1099 aa20.33■□□□□ 0.84
UBE3D-204ENST00000430071 COA7Q96BR5 231 aa20.33■□□□□ 0.84
UBE3D-204ENST00000430071 INHAP05111 366 aa20.32■□□□□ 0.84
UBE3D-204ENST00000430071 ERVK-9P63128 1117 aa20.32■□□□□ 0.84
UBE3D-204ENST00000430071 ERVK-24P63145 666 aa20.32■□□□□ 0.84
UBE3D-204ENST00000430071 TRIM32Q13049 653 aa20.32■□□□□ 0.84
UBE3D-204ENST00000430071 IRF5Q13568 498 aa20.32■□□□□ 0.84
UBE3D-204ENST00000430071 SLAIN1Q8ND83 568 aa20.32■□□□□ 0.84
UBE3D-204ENST00000430071 APPBP2Q92624 585 aa20.32■□□□□ 0.84
UBE3D-204ENST00000430071 RNF208Q9H0X6 261 aa20.32■□□□□ 0.84
UBE3D-204ENST00000430071 OSBPL3Q9H4L5 887 aa20.32■□□□□ 0.84
UBE3D-204ENST00000430071 EPB41L4AQ9HCS5 686 aaPredicted RBP20.32■□□□□ 0.84
UBE3D-204ENST00000430071 USP17L15C9J2P7 530 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 USP17L13C9JLJ4 530 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 USP17L11C9JVI0 530 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 USP17L18D6R9N7 530 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 USP17L22D6RA61 530 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 USP17L17D6RBQ6 530 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 USP17L19D6RCP7 530 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 USP17L20D6RJB6 530 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 USP17L24Q0WX57 530 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 C16orf86Q6ZW13 317 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 GPRC5AQ8NFJ5 357 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 RPAP3Q9H6T3 665 aaPredicted RBP20.31■□□□□ 0.84
UBE3D-204ENST00000430071 SWAP70Q9UH65 585 aa20.31■□□□□ 0.84
UBE3D-204ENST00000430071 A0A0G2JMZ2 1700 aa20.3■□□□□ 0.84
UBE3D-204ENST00000430071 GPAA1O43292 621 aa20.3■□□□□ 0.84
UBE3D-204ENST00000430071 USP14P54578 494 aa20.3■□□□□ 0.84
UBE3D-204ENST00000430071 PXYLP1Q8TE99 480 aa20.3■□□□□ 0.84
UBE3D-204ENST00000430071 BTBD7Q9P203 1132 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms