RNA–Protein interactions for RNA: ENST00000426962.1

LINC01238-202, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2

Gene LINC01238, Length 430 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-202ENST00000426962 TMEM179Q6ZVK1 233 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 SLC44A5Q8NCS7 719 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 ACER1Q8TDN7 264 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 COA7Q96BR5 231 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 CCDC17Q96LX7 622 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 MORF4L1Q9UBU8 362 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 STAP2Q9UGK3 403 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 GABRQQ9UN88 632 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 SUPT16HQ9Y5B9 1047 aaKnown RBP12.92□□□□□ -0.34
LINC01238-202ENST00000426962 USP17L15C9J2P7 530 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 PATL2C9JE40 543 aaKnown RBP12.91□□□□□ -0.34
LINC01238-202ENST00000426962 USP17L13C9JLJ4 530 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 USP17L11C9JVI0 530 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 USP17L18D6R9N7 530 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 USP17L22D6RA61 530 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 USP17L17D6RBQ6 530 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 USP17L19D6RCP7 530 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 USP17L20D6RJB6 530 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 GPAA1O43292 621 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 FLT3LGP49771 235 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 USP17L24Q0WX57 530 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 ZYXQ15942 572 aaKnown RBP12.91□□□□□ -0.34
LINC01238-202ENST00000426962 SBK1Q52WX2 424 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 C16orf86Q6ZW13 317 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 GPRC5AQ8NFJ5 357 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 EXOC6Q8TAG9 804 aa12.91□□□□□ -0.34
LINC01238-202ENST00000426962 GTF3C2Q8WUA4 911 aaPredicted RBP12.91□□□□□ -0.34
LINC01238-202ENST00000426962 ARPP21Q9UBL0 812 aaPredicted RBP12.91□□□□□ -0.34
LINC01238-202ENST00000426962 CENPFP49454 3210 aa12.9□□□□□ -0.34
LINC01238-202ENST00000426962 SMIM22K7EJ46 135 aa12.9□□□□□ -0.34
LINC01238-202ENST00000426962 EN2P19622 333 aaPredicted RBP12.9□□□□□ -0.34
LINC01238-202ENST00000426962 PDE1AP54750 535 aa12.9□□□□□ -0.34
LINC01238-202ENST00000426962 IRF5Q13568 498 aa12.9□□□□□ -0.34
LINC01238-202ENST00000426962 CATSPERGQ6ZRH7 1159 aa12.9□□□□□ -0.34
LINC01238-202ENST00000426962 SMC5Q8IY18 1101 aa12.9□□□□□ -0.34
LINC01238-202ENST00000426962 SLAIN1Q8ND83 568 aa12.9□□□□□ -0.34
LINC01238-202ENST00000426962 PXYLP1Q8TE99 480 aa12.9□□□□□ -0.34
LINC01238-202ENST00000426962 FSD1Q9BTV5 496 aa12.9□□□□□ -0.34
LINC01238-202ENST00000426962 RBPJLQ9UBG7 517 aa12.9□□□□□ -0.34
LINC01238-202ENST00000426962 BIN2Q9UBW5 565 aaPredicted RBP12.9□□□□□ -0.34
LINC01238-202ENST00000426962 LOC285556D6RIA3 1793 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 A0A1W2PRG0 241 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 M0R2C6 588 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 ADCY3O60266 1144 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 MYCP01106 439 aaPredicted RBP12.89□□□□□ -0.35
LINC01238-202ENST00000426962 IGHDP01880 384 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 APPP05067 770 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 AKR1B1P15121 316 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 VCAM1P19320 739 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 UBXN2AP68543 259 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 Q3C1V9 767 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 ZMYM1Q5SVZ6 1142 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 SIAH1Q8IUQ4 282 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 EVI5LQ96CN4 794 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 TXNRD2Q9NNW7 524 aa12.89□□□□□ -0.35
LINC01238-202ENST00000426962 DDX60LQ5H9U9 1706 aaKnown RBP12.88□□□□□ -0.35
LINC01238-202ENST00000426962 ZSWIM8A7E2V4 1837 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 MINDY4BA8MYZ0 360 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 ERVK-9P63128 1117 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 ERVK-24P63145 666 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 MTFR1Q15390 333 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 TICAM2Q86XR7 235 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 IFNL3Q8IZI9 196 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 SEC62Q99442 399 aaKnown RBP12.88□□□□□ -0.35
LINC01238-202ENST00000426962 LNPKQ9C0E8 428 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 RPAP3Q9H6T3 665 aaPredicted RBP12.88□□□□□ -0.35
LINC01238-202ENST00000426962 KANSL2Q9H9L4 492 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 MKNK2Q9HBH9 465 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 ARHGEF10LQ9HCE6 1279 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 HOXC10Q9NYD6 342 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 GJD2Q9UKL4 321 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 TMX2Q9Y320 296 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 RABGAP1Q9Y3P9 1069 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 NAV1Q8NEY1 1877 aa12.88□□□□□ -0.35
LINC01238-202ENST00000426962 PEX10O60683 326 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 MAPK4P31152 587 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 TDO2P48775 406 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 ICA1Q05084 483 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 COG2Q14746 738 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 B4GALNT3Q6L9W6 998 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 POTEEQ6S8J3 1075 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 LBX2Q6XYB7 198 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 CCAR1Q8IX12 1150 aaKnown RBP12.87□□□□□ -0.35
LINC01238-202ENST00000426962 LPAR1Q92633 364 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 PAGR1Q9BTK6 254 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 NACAP1Q9BZK3 213 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 SH2D4AQ9H788 454 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 ZNF287Q9HBT7 754 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 EPB41L4AQ9HCS5 686 aaPredicted RBP12.87□□□□□ -0.35
LINC01238-202ENST00000426962 MYH7P12883 1935 aa12.87□□□□□ -0.35
LINC01238-202ENST00000426962 CCL5P13501 91 aa12.86□□□□□ -0.35
LINC01238-202ENST00000426962 ELNP15502 786 aa12.86□□□□□ -0.35
LINC01238-202ENST00000426962 CCNA1P78396 465 aa12.86□□□□□ -0.35
LINC01238-202ENST00000426962 NUCB1Q02818 461 aa12.86□□□□□ -0.35
LINC01238-202ENST00000426962 CHD1LQ86WJ1 897 aa12.86□□□□□ -0.35
LINC01238-202ENST00000426962 ZNF444Q8N0Y2 327 aaPredicted RBP12.86□□□□□ -0.35
LINC01238-202ENST00000426962 NKX2-3Q8TAU0 364 aa12.86□□□□□ -0.35
LINC01238-202ENST00000426962 NUDT12Q9BQG2 462 aa12.86□□□□□ -0.35
LINC01238-202ENST00000426962 RNF208Q9H0X6 261 aa12.86□□□□□ -0.35
LINC01238-202ENST00000426962 MGAMO43451 1857 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms