RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 PSMD1Q99460 953 aa30.69■■■□□ 2.5
LDB1-202ENST00000425280 RBSNQ9H1K0 784 aa30.69■■■□□ 2.5
LDB1-202ENST00000425280 KCNJ14Q9UNX9 436 aa30.69■■■□□ 2.5
LDB1-202ENST00000425280 PCDHAC2Q9Y5I4 1007 aa30.69■■■□□ 2.5
LDB1-202ENST00000425280 CNTNAP5Q8WYK1 1306 aa30.68■■■□□ 2.5
LDB1-202ENST00000425280 GABPAQ06546 454 aa30.68■■■□□ 2.5
LDB1-202ENST00000425280 LINC00301Q8NCQ3 95 aa30.68■■■□□ 2.5
LDB1-202ENST00000425280 V9GY48 417 aaPredicted RBP30.68■■■□□ 2.5
LDB1-202ENST00000425280 NASPP49321 788 aaPredicted RBP30.67■■■□□ 2.5
LDB1-202ENST00000425280 OSBPL5Q9H0X9 879 aaPredicted RBP30.67■■■□□ 2.5
LDB1-202ENST00000425280 YEATS4O95619 227 aa30.67■■■□□ 2.5
LDB1-202ENST00000425280 MAP3K14Q99558 947 aa30.67■■■□□ 2.5
LDB1-202ENST00000425280 DACT1Q9NYF0 836 aa30.66■■■□□ 2.5
LDB1-202ENST00000425280 hCG_1642624A0A1W2PR95 340 aa30.66■■■□□ 2.5
LDB1-202ENST00000425280 KIF5BP33176 963 aa30.66■■■□□ 2.5
LDB1-202ENST00000425280 NFIAQ12857 509 aa30.66■■■□□ 2.5
LDB1-202ENST00000425280 SAFBQ15424 915 aaKnown RBP eCLIP30.66■■■□□ 2.5
LDB1-202ENST00000425280 ANO1Q5XXA6 986 aa30.66■■■□□ 2.5
LDB1-202ENST00000425280 TMEM47Q9BQJ4 181 aa30.66■■■□□ 2.5
LDB1-202ENST00000425280 TSPY26PQ9H489 355 aa30.66■■■□□ 2.5
LDB1-202ENST00000425280 ME1P48163 572 aa30.65■■■□□ 2.5
LDB1-202ENST00000425280 STK38Q15208 465 aa30.65■■■□□ 2.5
LDB1-202ENST00000425280 DIS3L2Q8IYB7 885 aaKnown RBP30.65■■■□□ 2.5
LDB1-202ENST00000425280 SHISA4Q96DD7 197 aa30.65■■■□□ 2.5
LDB1-202ENST00000425280 SERPINA10Q9UK55 444 aa30.65■■■□□ 2.5
LDB1-202ENST00000425280 STX8Q9UNK0 236 aa30.65■■■□□ 2.5
LDB1-202ENST00000425280 BTBD18B2RXH4 712 aa30.64■■■□□ 2.5
LDB1-202ENST00000425280 RBM5P52756 815 aaKnown RBP eCLIP30.64■■■□□ 2.5
LDB1-202ENST00000425280 ATF5Q9Y2D1 282 aaPredicted RBP30.64■■■□□ 2.5
LDB1-202ENST00000425280 PSME4Q14997 1843 aa30.64■■■□□ 2.5
LDB1-202ENST00000425280 GRM4Q14833 912 aa30.64■■■□□ 2.5
LDB1-202ENST00000425280 NOSTRINQ8IVI9 506 aa30.64■■■□□ 2.5
LDB1-202ENST00000425280 PCDHA7Q9UN72 937 aa30.64■■■□□ 2.5
LDB1-202ENST00000425280 NR1I2O75469 434 aa30.63■■■□□ 2.49
LDB1-202ENST00000425280 KCNG4Q8TDN1 519 aa30.63■■■□□ 2.49
LDB1-202ENST00000425280 FOXP1Q9H334 677 aaPredicted RBP30.63■■■□□ 2.49
LDB1-202ENST00000425280 DDX19AQ9NUU7 478 aaKnown RBP30.63■■■□□ 2.49
LDB1-202ENST00000425280 CCAR1Q8IX12 1150 aaKnown RBP30.62■■■□□ 2.49
LDB1-202ENST00000425280 NUP62CLQ9H1M0 184 aa30.62■■■□□ 2.49
LDB1-202ENST00000425280 VPS54Q9P1Q0 977 aa30.62■■■□□ 2.49
LDB1-202ENST00000425280 SERPINB13Q9UIV8 391 aa30.62■■■□□ 2.49
LDB1-202ENST00000425280 SPTLC2O15270 562 aa30.62■■■□□ 2.49
LDB1-202ENST00000425280 TGFB2P61812 414 aa30.62■■■□□ 2.49
LDB1-202ENST00000425280 ZNF277Q9NRM2 450 aaPredicted RBP30.62■■■□□ 2.49
LDB1-202ENST00000425280 PLIN4Q96Q06 1357 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 XBP1P17861 261 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 KLHL34Q8N239 644 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 CEP95Q96GE4 821 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 MTFR1LQ9H019 292 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 COL4A5P29400 1685 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 NOVP48745 357 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 CACNB3P54284 484 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 ZFPM1Q8IX07 1006 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 STAG2Q8N3U4 1231 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 GOLPH3LQ9H4A5 285 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 SWAP70Q9UH65 585 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 MAD2L2Q9UI95 211 aa30.61■■■□□ 2.49
LDB1-202ENST00000425280 MYH8P13535 1937 aa30.6■■■□□ 2.49
LDB1-202ENST00000425280 SF3A1Q15459 793 aaKnown RBP30.6■■■□□ 2.49
LDB1-202ENST00000425280 LARGE2Q8N3Y3 721 aa30.6■■■□□ 2.49
LDB1-202ENST00000425280 PHF20Q9BVI0 1012 aa30.6■■■□□ 2.49
LDB1-202ENST00000425280 IDI2Q9BXS1 227 aa30.6■■■□□ 2.49
LDB1-202ENST00000425280 PIM2Q9P1W9 311 aa30.6■■■□□ 2.49
LDB1-202ENST00000425280 POLD1P28340 1107 aa30.59■■■□□ 2.49
LDB1-202ENST00000425280 SLC39A14Q15043 492 aa30.59■■■□□ 2.49
LDB1-202ENST00000425280 ADALQ6DHV7 355 aa30.59■■■□□ 2.49
LDB1-202ENST00000425280 OXER1Q8TDS5 423 aa30.59■■■□□ 2.49
LDB1-202ENST00000425280 CLSTN2Q9H4D0 955 aa30.59■■■□□ 2.49
LDB1-202ENST00000425280 HLA-DOAP06340 250 aa30.59■■■□□ 2.49
LDB1-202ENST00000425280 NR5A1Q13285 461 aa30.58■■■□□ 2.49
LDB1-202ENST00000425280 CAMK4Q16566 473 aa30.58■■■□□ 2.49
LDB1-202ENST00000425280 SOGA3Q5TF21 947 aa30.58■■■□□ 2.49
LDB1-202ENST00000425280 FUCA2Q9BTY2 467 aa30.58■■■□□ 2.49
LDB1-202ENST00000425280 FAM198AQ9UFP1 575 aa30.58■■■□□ 2.49
LDB1-202ENST00000425280 MYO3BQ8WXR4 1341 aa30.58■■■□□ 2.49
LDB1-202ENST00000425280 TOP1P11387 765 aaKnown RBP30.58■■■□□ 2.49
LDB1-202ENST00000425280 AKR1B1P15121 316 aa30.58■■■□□ 2.49
LDB1-202ENST00000425280 SHMT1P34896 483 aa30.58■■■□□ 2.49
LDB1-202ENST00000425280 GNAQP50148 359 aa30.58■■■□□ 2.49
LDB1-202ENST00000425280 BAZ2BQ9UIF8 2168 aaKnown RBP30.57■■■□□ 2.48
LDB1-202ENST00000425280 A0A1W2PQ27 194 aa30.57■■■□□ 2.48
LDB1-202ENST00000425280 A0A1W2PQ64 194 aa30.57■■■□□ 2.48
LDB1-202ENST00000425280 A0A1W2PQD8 194 aa30.57■■■□□ 2.48
LDB1-202ENST00000425280 PTPAQ15257 358 aa30.57■■■□□ 2.48
LDB1-202ENST00000425280 EHD4Q9H223 541 aa30.57■■■□□ 2.48
LDB1-202ENST00000425280 VPS33BQ9H267 617 aa30.57■■■□□ 2.48
LDB1-202ENST00000425280 SCG2P13521 617 aa30.56■■■□□ 2.48
LDB1-202ENST00000425280 TCP10Q12799 353 aa30.56■■■□□ 2.48
LDB1-202ENST00000425280 MAP3K11Q16584 847 aa30.56■■■□□ 2.48
LDB1-202ENST00000425280 PFKFB3Q16875 520 aaPredicted RBP30.56■■■□□ 2.48
LDB1-202ENST00000425280 CFAP100Q494V2 611 aa30.56■■■□□ 2.48
LDB1-202ENST00000425280 RSBN1LQ6PCB5 846 aaPredicted RBP30.56■■■□□ 2.48
LDB1-202ENST00000425280 FSIP1Q8NA03 581 aa30.56■■■□□ 2.48
LDB1-202ENST00000425280 TNMDQ9H2S6 317 aa30.56■■■□□ 2.48
LDB1-202ENST00000425280 MTMR7Q9Y216 660 aa30.56■■■□□ 2.48
LDB1-202ENST00000425280 IGKV6D-41A0A0C4DH26 115 aa30.56■■■□□ 2.48
LDB1-202ENST00000425280 PALM3A6NDB9 673 aaPredicted RBP30.56■■■□□ 2.48
LDB1-202ENST00000425280 NPM3O75607 178 aaKnown RBP30.56■■■□□ 2.48
LDB1-202ENST00000425280 RAD17O75943 681 aa30.56■■■□□ 2.48
LDB1-202ENST00000425280 CCDC73Q6ZRK6 1079 aa30.56■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms