RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SH3RF1Q7Z6J0 888 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 IGDCC4Q8TDY8 1250 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 ZNF594Q96JF6 807 aaPredicted RBP12.09□□□□□ -0.47
USP54-204ENST00000422491 GDAP1L1Q96MZ0 367 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 SELENOOQ9BVL4 669 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 PCDHB6Q9Y5E3 794 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 EID1Q9Y6B2 187 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 PARP4Q9UKK3 1724 aaKnown RBP12.09□□□□□ -0.47
USP54-204ENST00000422491 LAMB4A4D0S4 1761 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 A0A087X0B3 334 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 LRRC10BA6NIK2 292 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 ENC1O14682 589 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 CIAO1O76071 339 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 SCARF1Q14162 830 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 PAPD7Q5XG87 772 aaKnown RBP12.08□□□□□ -0.48
USP54-204ENST00000422491 SGMS1Q86VZ5 419 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 DIS3L2Q8IYB7 885 aaKnown RBP12.08□□□□□ -0.48
USP54-204ENST00000422491 CRACR2AQ9BSW2 395 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 SLC26A6Q9BXS9 759 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 CSRNP2Q9H175 543 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 PHF8Q9UPP1 1060 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 SCN11AQ9UI33 1791 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 GOLGA6CA6NDK9 693 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 GOLGA8AA7E2F4 631 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 FMNL1O95466 1100 aaPredicted RBP12.08□□□□□ -0.48
USP54-204ENST00000422491 ATP1A1P05023 1023 aaKnown RBP12.08□□□□□ -0.48
USP54-204ENST00000422491 GOLGA6DP0CG33 693 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 GUCY1A2P33402 732 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 CCT6AP40227 531 aaKnown RBP12.08□□□□□ -0.48
USP54-204ENST00000422491 KRT31Q15323 416 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 FBXW10Q5XX13 1052 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 GSPT2Q8IYD1 628 aaKnown RBP12.08□□□□□ -0.48
USP54-204ENST00000422491 SMYD4Q8IYR2 804 aaPredicted RBP12.08□□□□□ -0.48
USP54-204ENST00000422491 PLBD2Q8NHP8 589 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 RPGRIP1Q96KN7 1286 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 MYL10Q9BUA6 226 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 EHD4Q9H223 541 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 CXorf56Q9H5V9 222 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 LY9Q9HBG7 655 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 STRN4Q9NRL3 753 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 GOLGA6AQ9NYA3 693 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 LIMA1Q9UHB6 759 aaKnown RBP12.08□□□□□ -0.48
USP54-204ENST00000422491 GUCA1BQ9UMX6 200 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 SAR1BQ9Y6B6 198 aa12.08□□□□□ -0.48
USP54-204ENST00000422491 EIF3HO15372 352 aaKnown RBP eCLIP12.07□□□□□ -0.48
USP54-204ENST00000422491 ZMYND10O75800 440 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 NDUFA10O95299 355 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 TRHP20396 242 aaPredicted RBP12.07□□□□□ -0.48
USP54-204ENST00000422491 ADORA1P30542 326 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 DPYDQ12882 1025 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 PPFIA1Q13136 1202 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 CCNI2Q6ZMN8 369 aaPredicted RBP12.07□□□□□ -0.48
USP54-204ENST00000422491 TMEM87BQ96K49 555 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 CHP1Q99653 195 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 PUS3Q9BZE2 481 aaKnown RBP12.07□□□□□ -0.48
USP54-204ENST00000422491 FOXP1Q9H334 677 aaPredicted RBP12.07□□□□□ -0.48
USP54-204ENST00000422491 EPN1Q9Y6I3 576 aaPredicted RBP12.07□□□□□ -0.48
USP54-204ENST00000422491 ARHGAP23Q9P227 1491 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 MYH7P12883 1935 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 B4E1Z4 1266 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 SRGAP2O75044 1071 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 CASP1P29466 404 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 SSRP1Q08945 709 aaKnown RBP12.07□□□□□ -0.48
USP54-204ENST00000422491 TRIM14Q14142 442 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 CNPY4Q8N129 248 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 BCAS4Q8TDM0 211 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 NUP88Q99567 741 aaPredicted RBP12.07□□□□□ -0.48
USP54-204ENST00000422491 HAUS4Q9H6D7 363 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 KCNJ14Q9UNX9 436 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 TJP1Q07157 1748 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 SNRPA1P09661 255 aaKnown RBP12.07□□□□□ -0.48
USP54-204ENST00000422491 KRT9P35527 623 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 ZAP70P43403 619 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 POTEDQ86YR6 584 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 SECISBP2LQ93073 1101 aaKnown RBP12.07□□□□□ -0.48
USP54-204ENST00000422491 PAGE5Q96GU1 130 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 GSDMAQ96QA5 445 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 SH3GL2Q99962 352 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 CAPS2Q9BXY5 557 aa12.07□□□□□ -0.48
USP54-204ENST00000422491 GOLGA6BA6NDN3 693 aa12.06□□□□□ -0.48
USP54-204ENST00000422491 N4BP3O15049 544 aa12.06□□□□□ -0.48
USP54-204ENST00000422491 IFNAR1P17181 557 aa12.06□□□□□ -0.48
USP54-204ENST00000422491 AFMP43652 599 aa12.06□□□□□ -0.48
USP54-204ENST00000422491 SAFBQ15424 915 aaKnown RBP eCLIP12.06□□□□□ -0.48
USP54-204ENST00000422491 AENQ8WTP8 325 aaKnown RBP12.06□□□□□ -0.48
USP54-204ENST00000422491 XAGE2Q96GT9 111 aa12.06□□□□□ -0.48
USP54-204ENST00000422491 KCNA6P17658 529 aa12.06□□□□□ -0.48
USP54-204ENST00000422491 MNAT1P51948 309 aa12.06□□□□□ -0.48
USP54-204ENST00000422491 CKAP4Q07065 602 aaKnown RBP12.06□□□□□ -0.48
USP54-204ENST00000422491 NR5A1Q13285 461 aa12.06□□□□□ -0.48
USP54-204ENST00000422491 GBP6Q6ZN66 633 aa12.06□□□□□ -0.48
USP54-204ENST00000422491 PRPF38AQ8NAV1 312 aaKnown RBP12.06□□□□□ -0.48
USP54-204ENST00000422491 ANKRD20A12PQ8NF67 263 aa12.06□□□□□ -0.48
USP54-204ENST00000422491 WASF1Q92558 559 aa12.06□□□□□ -0.48
USP54-204ENST00000422491 AATFQ9NY61 560 aaKnown RBP eCLIP12.06□□□□□ -0.48
USP54-204ENST00000422491 NID2Q14112 1375 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 ABCC12Q96J65 1359 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 ATXN2Q99700 1313 aaKnown RBP12.05□□□□□ -0.48
USP54-204ENST00000422491 INPP5BP32019 993 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 MAP2K2P36507 400 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms