RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 ARHGAP25P42331 645 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 HSP90B2PQ58FF3 399 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 FAM71BQ8TC56 605 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 WASF1Q92558 559 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 FAM89AQ96GI7 184 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 ZKSCAN3Q9BRR0 538 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 RIC1Q4ADV7 1423 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 WHAMMP3Q1A5X7 153 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 LRRC31Q6UY01 552 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 CNGA4Q8IV77 575 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 PLEKHA4Q9H4M7 779 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 EFCC1Q9HA90 598 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 CABP5Q9NP86 173 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 FAM205CA6NFA0 338 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 LIFRP42702 1097 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 METTL24Q5JXM2 366 aa24.11■■□□□ 1.45
USP48-205ENST00000421625 ATRNO75882 1429 aa24.1■■□□□ 1.45
USP48-205ENST00000421625 ANKRD65E5RJM6 399 aa24.1■■□□□ 1.45
USP48-205ENST00000421625 DPYDQ12882 1025 aa24.1■■□□□ 1.45
USP48-205ENST00000421625 FAM204AQ9H8W3 233 aa24.1■■□□□ 1.45
USP48-205ENST00000421625 STRN4Q9NRL3 753 aa24.1■■□□□ 1.45
USP48-205ENST00000421625 RNF216Q9NWF9 866 aaPredicted RBP24.1■■□□□ 1.45
USP48-205ENST00000421625 PDE6AP16499 860 aa24.1■■□□□ 1.45
USP48-205ENST00000421625 FILIP1LQ4L180 1135 aa24.1■■□□□ 1.45
USP48-205ENST00000421625 EPB41L4AQ9HCS5 686 aaPredicted RBP24.1■■□□□ 1.45
USP48-205ENST00000421625 PIP4K2BP78356 416 aa24.09■■□□□ 1.45
USP48-205ENST00000421625 PAGE5Q96GU1 130 aa24.09■■□□□ 1.45
USP48-205ENST00000421625 GBP3Q9H0R5 595 aa24.09■■□□□ 1.45
USP48-205ENST00000421625 ZNF330Q9Y3S2 320 aaPredicted RBP24.09■■□□□ 1.45
USP48-205ENST00000421625 PPP1R3GB7ZBB8 358 aa24.09■■□□□ 1.45
USP48-205ENST00000421625 FECHP22830 423 aa24.09■■□□□ 1.45
USP48-205ENST00000421625 IFIT5Q13325 482 aaKnown RBP24.09■■□□□ 1.45
USP48-205ENST00000421625 TRIM22Q8IYM9 498 aa24.09■■□□□ 1.45
USP48-205ENST00000421625 CTAGE1Q96RT6 745 aa24.09■■□□□ 1.45
USP48-205ENST00000421625 STRBPQ96SI9 672 aaKnown RBP24.09■■□□□ 1.45
USP48-205ENST00000421625 SLF1Q9BQI6 1058 aa24.09■■□□□ 1.45
USP48-205ENST00000421625 AMPD2Q01433 879 aa24.08■■□□□ 1.45
USP48-205ENST00000421625 UBE3CQ15386 1083 aa24.08■■□□□ 1.45
USP48-205ENST00000421625 RTN1Q16799 776 aa24.08■■□□□ 1.45
USP48-205ENST00000421625 SYNE4Q8N205 404 aa24.08■■□□□ 1.45
USP48-205ENST00000421625 ISCA1Q9BUE6 129 aa24.08■■□□□ 1.45
USP48-205ENST00000421625 ABHD10Q9NUJ1 306 aa24.08■■□□□ 1.45
USP48-205ENST00000421625 FBXO3Q9UK99 471 aa24.08■■□□□ 1.45
USP48-205ENST00000421625 MYO6Q9UM54 1294 aa24.08■■□□□ 1.45
USP48-205ENST00000421625 TUBB4BP68371 445 aa24.08■■□□□ 1.45
USP48-205ENST00000421625 RRP12Q5JTH9 1297 aaKnown RBP24.08■■□□□ 1.45
USP48-205ENST00000421625 TRIM10Q9UDY6 481 aa24.08■■□□□ 1.45
USP48-205ENST00000421625 CTNND2Q9UQB3 1225 aa24.08■■□□□ 1.45
USP48-205ENST00000421625 EIF3CLB5ME19 914 aaKnown RBP24.07■■□□□ 1.44
USP48-205ENST00000421625 STAMQ92783 540 aa24.07■■□□□ 1.44
USP48-205ENST00000421625 AIDAQ96BJ3 306 aa24.07■■□□□ 1.44
USP48-205ENST00000421625 EIF3CQ99613 913 aaKnown RBP24.07■■□□□ 1.44
USP48-205ENST00000421625 TMTC1Q8IUR5 882 aa24.07■■□□□ 1.44
USP48-205ENST00000421625 CCDC51Q96ER9 411 aa24.07■■□□□ 1.44
USP48-205ENST00000421625 CEP131Q9UPN4 1083 aa24.07■■□□□ 1.44
USP48-205ENST00000421625 KRT31Q15323 416 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 SH3RF1Q7Z6J0 888 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 TCRBV5S4A2TA0A5A2 114 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 PACS2Q86VP3 889 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 SYMPKQ92797 1274 aaKnown RBP24.06■■□□□ 1.44
USP48-205ENST00000421625 VPS16Q9H269 839 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 RIPOR2Q9Y4F9 1068 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 RNF40O75150 1001 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 AKAP17AQ02040 695 aaKnown RBP24.06■■□□□ 1.44
USP48-205ENST00000421625 CRACR2BQ8N4Y2 399 aaPredicted RBP24.06■■□□□ 1.44
USP48-205ENST00000421625 SHISA4Q96DD7 197 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 NUP88Q99567 741 aaPredicted RBP24.06■■□□□ 1.44
USP48-205ENST00000421625 TOMM22Q9NS69 142 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 AATFQ9NY61 560 aaKnown RBP eCLIP24.06■■□□□ 1.44
USP48-205ENST00000421625 TBC1D2BQ9UPU7 963 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 ITIH6Q6UXX5 1313 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 LRP6O75581 1613 aa24.06■■□□□ 1.44
USP48-205ENST00000421625 DEXIO95424 95 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 MAGEA9P43362 315 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 TTF1Q15361 905 aaPredicted RBP24.05■■□□□ 1.44
USP48-205ENST00000421625 EARS2Q5JPH6 523 aaKnown RBP24.05■■□□□ 1.44
USP48-205ENST00000421625 TOM1L2Q6ZVM7 507 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 IFNL3Q8IZI9 196 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 NAPBQ9H115 298 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 MED4Q9NPJ6 270 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 WDR17Q8IZU2 1322 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 N4BP3O15049 544 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 PHKA1P46020 1223 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 NOM1Q5C9Z4 860 aaKnown RBP24.05■■□□□ 1.44
USP48-205ENST00000421625 WDR93Q6P2C0 686 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 LDHAL6AQ6ZMR3 332 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 HDAC6Q9UBN7 1215 aa24.05■■□□□ 1.44
USP48-205ENST00000421625 SYF2O95926 243 aaKnown RBP24.04■■□□□ 1.44
USP48-205ENST00000421625 TCIRG1Q13488 830 aa24.04■■□□□ 1.44
USP48-205ENST00000421625 CYP26C1Q6V0L0 522 aa24.04■■□□□ 1.44
USP48-205ENST00000421625 GOLGA6L1Q8N7Z2 621 aa24.04■■□□□ 1.44
USP48-205ENST00000421625 MKRN1Q9UHC7 482 aaKnown RBP24.04■■□□□ 1.44
USP48-205ENST00000421625 WNT7AO00755 349 aa24.04■■□□□ 1.44
USP48-205ENST00000421625 ENC1O14682 589 aa24.04■■□□□ 1.44
USP48-205ENST00000421625 SEMA3EO15041 775 aa24.04■■□□□ 1.44
USP48-205ENST00000421625 CT47A1Q5JQC4 288 aaPredicted RBP24.04■■□□□ 1.44
USP48-205ENST00000421625 NUP133Q8WUM0 1156 aa24.04■■□□□ 1.44
USP48-205ENST00000421625 CHP1Q99653 195 aa24.04■■□□□ 1.44
USP48-205ENST00000421625 TAB2Q9NYJ8 693 aa24.04■■□□□ 1.44
USP48-205ENST00000421625 GUCA1BQ9UMX6 200 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms