RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 SLC7A14Q8TBB6 771 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 USP33Q8TEY7 942 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 RASSF4Q9H2L5 321 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 HCN2Q9UL51 889 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 TNPO3Q9Y5L0 923 aaKnown RBP6.42□□□□□ -1.38
VPS13A-207ENST00000419472 DISP1Q96F81 1524 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 NEMP1O14524 444 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 SERPINB3P29508 390 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 NCAPHQ15003 741 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 ZNF423Q2M1K9 1284 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 RNF219Q5W0B1 726 aaPredicted RBP6.42□□□□□ -1.38
VPS13A-207ENST00000419472 MAP1SQ66K74 1059 aaPredicted RBP6.42□□□□□ -1.38
VPS13A-207ENST00000419472 MEIOBQ8N635 442 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 ATG4CQ96DT6 458 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 TRIM39Q9HCM9 518 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 FAM50BQ9Y247 325 aa6.42□□□□□ -1.38
VPS13A-207ENST00000419472 GOLGA6CA6NDK9 693 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 GOLGA6BA6NDN3 693 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 J3QW42 95 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 GOLGA6DP0CG33 693 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 PPP2R2AP63151 447 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 RAPGEF1Q13905 1077 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 FAM83BQ5T0W9 1011 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 ACBD5Q5T8D3 534 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-207ENST00000419472 HFE2Q6ZVN8 426 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 IFNL3Q8IZI9 196 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 MYRIPQ8NFW9 859 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 NAP1L4Q99733 375 aaKnown RBP6.41□□□□□ -1.38
VPS13A-207ENST00000419472 GOLGA6AQ9NYA3 693 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 LUC7L2Q9Y383 392 aaKnown RBP6.41□□□□□ -1.38
VPS13A-207ENST00000419472 J3QL48 77 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 PDE2AO00408 941 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-207ENST00000419472 TBX3O15119 743 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 TBX1O43435 398 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 PTPN21Q16825 1174 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 GNPTABQ3T906 1256 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 PPM1KQ8N3J5 372 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 TMEM102Q8N9M5 508 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-207ENST00000419472 CRTAC1Q9NQ79 661 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 INTS7Q9NVH2 962 aaKnown RBP6.41□□□□□ -1.38
VPS13A-207ENST00000419472 REV1Q9UBZ9 1251 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 SAMD9Q5K651 1589 aa6.41□□□□□ -1.38
VPS13A-207ENST00000419472 CCDC163A0A0D9SF12 145 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 CPEP16870 476 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 MLLT1Q03111 559 aaPredicted RBP6.4□□□□□ -1.38
VPS13A-207ENST00000419472 HLTFQ14527 1009 aaKnown RBP eCLIP6.4□□□□□ -1.381e-8■■□□□ 11.6
VPS13A-207ENST00000419472 SYDE2Q5VT97 1194 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 KRBA2Q6ZNG9 492 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 BRAPQ7Z569 592 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 PPM1EQ8WY54 764 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 ZC3H12CQ9C0D7 883 aaKnown RBP6.4□□□□□ -1.38
VPS13A-207ENST00000419472 SLC52A2Q9HAB3 445 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 TIMMDC1Q9NPL8 285 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 CASS4Q9NQ75 786 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 STRN4Q9NRL3 753 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 ZBTB21Q9ULJ3 1066 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 KCNH4Q9UQ05 1017 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 ABCC2Q92887 1545 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 A0A1B0GTH6 734 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 IQCA1LA6NCM1 817 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 APAF1O14727 1248 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 ARAFP10398 606 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 NME1P15531 152 aaKnown RBP6.4□□□□□ -1.38
VPS13A-207ENST00000419472 PPP2R3AQ06190 1150 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 ZNF252P-AS1Q0IIN9 211 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 HYAL2Q12891 473 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 INPP5AQ14642 412 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 RNF217Q8TC41 542 aa6.4□□□□□ -1.38
VPS13A-207ENST00000419472 CLEC4MQ9H2X3 399 aaPredicted RBP6.4□□□□□ -1.38
VPS13A-207ENST00000419472 PHAXQ9H814 394 aaKnown RBP6.4□□□□□ -1.38
VPS13A-207ENST00000419472 TLR7Q9NYK1 1049 aaKnown RBP6.4□□□□□ -1.38
VPS13A-207ENST00000419472 KIF13AQ9H1H9 1805 aa6.4□□□□□ -1.39
VPS13A-207ENST00000419472 EFCAB5A4FU69 1503 aa6.4□□□□□ -1.39
VPS13A-207ENST00000419472 DCDC2BA2VCK2 349 aa6.4□□□□□ -1.39
VPS13A-207ENST00000419472 JMJD7P0C870 316 aa6.4□□□□□ -1.39
VPS13A-207ENST00000419472 POU5F1BQ06416 359 aa6.4□□□□□ -1.39
VPS13A-207ENST00000419472 ZC3H12BQ5HYM0 836 aaKnown RBP6.4□□□□□ -1.39
VPS13A-207ENST00000419472 RPS26P11Q5JNZ5 115 aaPredicted RBP6.4□□□□□ -1.39
VPS13A-207ENST00000419472 NLRC3Q7RTR2 1065 aa6.4□□□□□ -1.39
VPS13A-207ENST00000419472 MORC1Q86VD1 984 aa6.4□□□□□ -1.39
VPS13A-207ENST00000419472 SPATS2Q86XZ4 545 aaKnown RBP6.4□□□□□ -1.39
VPS13A-207ENST00000419472 PAF1Q8N7H5 531 aa6.4□□□□□ -1.39
VPS13A-207ENST00000419472 POP1Q99575 1024 aaKnown RBP6.4□□□□□ -1.39
VPS13A-207ENST00000419472 SENP7Q9BQF6 1050 aa6.4□□□□□ -1.39
VPS13A-207ENST00000419472 NDOR1Q9UHB4 597 aa6.4□□□□□ -1.39
VPS13A-207ENST00000419472 GLI2P10070 1586 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 PTPRGP23470 1445 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 SLC22A31A6NKX4 558 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 SPINT1O43278 529 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 NBPF7P0C2Y1 421 aaPredicted RBP6.39□□□□□ -1.39
VPS13A-207ENST00000419472 TRIM27P14373 513 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 SLC7A5Q01650 507 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 PDZD3Q86UT5 571 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 PARD3BQ8TEW8 1205 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 PPP1R14AQ96A00 147 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 FBRSQ9HAH7 460 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 APEX2Q9UBZ4 518 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 USP25Q9UHP3 1055 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 TRAV20A0A0B4J274 112 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 PIP5K1CO60331 668 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms