RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 CABP5Q9NP86 173 aa22.21■■□□□ 1.15
PTCD3-204ENST00000418628 TSKSQ9UJT2 592 aa22.21■■□□□ 1.15
PTCD3-204ENST00000418628 SLC45A1Q9Y2W3 748 aa22.21■■□□□ 1.15
PTCD3-204ENST00000418628 IGKV6D-41A0A0C4DH26 115 aa22.2■■□□□ 1.14
PTCD3-204ENST00000418628 MTMR2Q13614 643 aa22.2■■□□□ 1.14
PTCD3-204ENST00000418628 OTUD7BQ6GQQ9 843 aa22.2■■□□□ 1.14
PTCD3-204ENST00000418628 FASTKD5Q7L8L6 764 aaKnown RBP22.2■■□□□ 1.14
PTCD3-204ENST00000418628 C12orf42Q96LP6 360 aa22.2■■□□□ 1.14
PTCD3-204ENST00000418628 C19orf81C9J6K1 198 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 USP17L10C9JJH3 530 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 ORC4O43929 436 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 HMGCS2P54868 508 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 CTDSPL2Q05D32 466 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 CRHR2Q13324 411 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 DGKZQ13574 1117 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 RAB3GAP1Q15042 981 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 SIAH1Q8IUQ4 282 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 KIAA1683Q9H0B3 1180 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 PRDM10Q9NQV6 1147 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 AGTPBP1Q9UPW5 1226 aa22.19■■□□□ 1.14
PTCD3-204ENST00000418628 LBX1P52954 281 aa22.18■■□□□ 1.14
PTCD3-204ENST00000418628 PDE4BQ07343 736 aa22.18■■□□□ 1.14
PTCD3-204ENST00000418628 CLEC10AQ8IUN9 316 aa22.18■■□□□ 1.14
PTCD3-204ENST00000418628 ACER1Q8TDN7 264 aa22.18■■□□□ 1.14
PTCD3-204ENST00000418628 ZNF287Q9HBT7 754 aa22.18■■□□□ 1.14
PTCD3-204ENST00000418628 A0A1W2PRG0 241 aa22.17■■□□□ 1.14
PTCD3-204ENST00000418628 MPHOSPH10O00566 681 aaKnown RBP22.17■■□□□ 1.14
PTCD3-204ENST00000418628 PRDM1O75626 825 aa22.17■■□□□ 1.14
PTCD3-204ENST00000418628 TBC1D8O95759 1140 aa22.17■■□□□ 1.14
PTCD3-204ENST00000418628 SLC3A2P08195 630 aaKnown RBP22.17■■□□□ 1.14
PTCD3-204ENST00000418628 TAF1CQ15572 869 aaPredicted RBP22.17■■□□□ 1.14
PTCD3-204ENST00000418628 TREML2Q5T2D2 321 aa22.17■■□□□ 1.14
PTCD3-204ENST00000418628 TBC1D10CQ8IV04 446 aa22.17■■□□□ 1.14
PTCD3-204ENST00000418628 ESYT1Q9BSJ8 1104 aa22.17■■□□□ 1.14
PTCD3-204ENST00000418628 EMILIN3Q9NT22 766 aa22.17■■□□□ 1.14
PTCD3-204ENST00000418628 PLXNB2O15031 1838 aa22.16■■□□□ 1.14
PTCD3-204ENST00000418628 PDHXO00330 501 aa22.16■■□□□ 1.14
PTCD3-204ENST00000418628 PTH1RQ03431 593 aa22.16■■□□□ 1.14
PTCD3-204ENST00000418628 ICA1Q05084 483 aa22.16■■□□□ 1.14
PTCD3-204ENST00000418628 GADL1Q6ZQY3 521 aa22.16■■□□□ 1.14
PTCD3-204ENST00000418628 STK11IPQ8N1F8 1099 aa22.16■■□□□ 1.14
PTCD3-204ENST00000418628 STAG1Q8WVM7 1258 aa22.16■■□□□ 1.14
PTCD3-204ENST00000418628 MKNK2Q9HBH9 465 aa22.16■■□□□ 1.14
PTCD3-204ENST00000418628 CDC45O75419 566 aa22.15■■□□□ 1.14
PTCD3-204ENST00000418628 PCP11498 1178 aaKnown RBP22.15■■□□□ 1.14
PTCD3-204ENST00000418628 USP17L2Q6R6M4 530 aa22.15■■□□□ 1.14
PTCD3-204ENST00000418628 NEDD1Q8NHV4 660 aa22.15■■□□□ 1.14
PTCD3-204ENST00000418628 KANSL2Q9H9L4 492 aa22.15■■□□□ 1.14
PTCD3-204ENST00000418628 TMX2Q9Y320 296 aa22.15■■□□□ 1.14
PTCD3-204ENST00000418628 GPR25O00155 361 aa22.14■■□□□ 1.13
PTCD3-204ENST00000418628 TLR2O60603 784 aa22.14■■□□□ 1.13
PTCD3-204ENST00000418628 HOXA7P31268 230 aaPredicted RBP22.14■■□□□ 1.13
PTCD3-204ENST00000418628 USP14P54578 494 aa22.14■■□□□ 1.13
PTCD3-204ENST00000418628 HAND2P61296 217 aa22.14■■□□□ 1.13
PTCD3-204ENST00000418628 LSG1Q9H089 658 aaKnown RBP22.14■■□□□ 1.13
PTCD3-204ENST00000418628 INCENPQ9NQS7 918 aa22.14■■□□□ 1.13
PTCD3-204ENST00000418628 NEDD4P46934 1319 aa22.13■■□□□ 1.13
PTCD3-204ENST00000418628 NOVP48745 357 aa22.13■■□□□ 1.13
PTCD3-204ENST00000418628 AKNAD1Q5T1N1 836 aa22.13■■□□□ 1.13
PTCD3-204ENST00000418628 NKX2-3Q8TAU0 364 aa22.13■■□□□ 1.13
PTCD3-204ENST00000418628 MAP4K1Q92918 833 aa22.13■■□□□ 1.13
PTCD3-204ENST00000418628 PARK7Q99497 189 aaKnown RBP22.13■■□□□ 1.13
PTCD3-204ENST00000418628 ZFYVE28Q9HCC9 887 aa22.13■■□□□ 1.13
PTCD3-204ENST00000418628 NYAP2Q9P242 653 aa22.13■■□□□ 1.13
PTCD3-204ENST00000418628 CTNNA3Q9UI47 895 aa22.13■■□□□ 1.13
PTCD3-204ENST00000418628 MYH6P13533 1939 aa22.13■■□□□ 1.13
PTCD3-204ENST00000418628 ZNFX1Q9P2E3 1918 aaKnown RBP22.12■■□□□ 1.13
PTCD3-204ENST00000418628 EEF2P13639 858 aaKnown RBP22.12■■□□□ 1.13
PTCD3-204ENST00000418628 VCAM1P19320 739 aa22.12■■□□□ 1.13
PTCD3-204ENST00000418628 KIAA1755Q5JYT7 1200 aa22.12■■□□□ 1.13
PTCD3-204ENST00000418628 ZNF444Q8N0Y2 327 aaPredicted RBP22.12■■□□□ 1.13
PTCD3-204ENST00000418628 ZNF296Q8WUU4 475 aaPredicted RBP22.12■■□□□ 1.13
PTCD3-204ENST00000418628 CEP95Q96GE4 821 aa22.12■■□□□ 1.13
PTCD3-204ENST00000418628 FEZ1Q99689 392 aa22.12■■□□□ 1.13
PTCD3-204ENST00000418628 ARHGEF10LQ9HCE6 1279 aa22.12■■□□□ 1.13
PTCD3-204ENST00000418628 TMOD4Q9NZQ9 345 aa22.12■■□□□ 1.13
PTCD3-204ENST00000418628 NT5C2P49902 561 aa22.11■■□□□ 1.13
PTCD3-204ENST00000418628 C17orf99Q6UX52 265 aa22.11■■□□□ 1.13
PTCD3-204ENST00000418628 SH2D4AQ9H788 454 aa22.11■■□□□ 1.13
PTCD3-204ENST00000418628 VCPKMTQ9H867 229 aa22.11■■□□□ 1.13
PTCD3-204ENST00000418628 MTMR4Q9NYA4 1195 aa22.11■■□□□ 1.13
PTCD3-204ENST00000418628 SYNPO2Q9UMS6 1093 aa22.11■■□□□ 1.13
PTCD3-204ENST00000418628 ZNF213O14771 459 aa22.1■■□□□ 1.13
PTCD3-204ENST00000418628 TSPY3P0CV98 308 aa22.1■■□□□ 1.13
PTCD3-204ENST00000418628 TSPY8P0CW00 308 aa22.1■■□□□ 1.13
PTCD3-204ENST00000418628 CYP2C8P10632 490 aa22.1■■□□□ 1.13
PTCD3-204ENST00000418628 BCRP11274 1271 aa22.1■■□□□ 1.13
PTCD3-204ENST00000418628 TFAP4Q01664 338 aa22.1■■□□□ 1.13
PTCD3-204ENST00000418628 IMMTQ16891 758 aaKnown RBP22.1■■□□□ 1.13
PTCD3-204ENST00000418628 FAM47AQ5JRC9 791 aa22.1■■□□□ 1.13
PTCD3-204ENST00000418628 LPAR1Q92633 364 aa22.1■■□□□ 1.13
PTCD3-204ENST00000418628 MKL1Q969V6 931 aa22.1■■□□□ 1.13
PTCD3-204ENST00000418628 ASCC2Q9H1I8 757 aaPredicted RBP22.1■■□□□ 1.13
PTCD3-204ENST00000418628 RNF41Q9H4P4 317 aaPredicted RBP22.1■■□□□ 1.13
PTCD3-204ENST00000418628 IL17RBQ9NRM6 502 aa22.1■■□□□ 1.13
PTCD3-204ENST00000418628 PNMA3Q9UL41 463 aa22.1■■□□□ 1.13
PTCD3-204ENST00000418628 U3KPZ7 1027 aaPredicted RBP22.1■■□□□ 1.13
PTCD3-204ENST00000418628 CYP21A2P08686 494 aa22.09■■□□□ 1.13
PTCD3-204ENST00000418628 PABPC4Q13310 644 aaKnown RBP eCLIP22.09■■□□□ 1.13
PTCD3-204ENST00000418628 ZYXQ15942 572 aaKnown RBP22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms