RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 XRCC5P13010 732 aaKnown RBP15.76■□□□□ 0.11
LINC00339-202ENST00000416769 PLCG2P16885 1265 aa15.76■□□□□ 0.11
LINC00339-202ENST00000416769 GUCY1A2P33402 732 aa15.76■□□□□ 0.11
LINC00339-202ENST00000416769 USP17L2Q6R6M4 530 aa15.76■□□□□ 0.11
LINC00339-202ENST00000416769 PLEKHH3Q7Z736 793 aa15.76■□□□□ 0.11
LINC00339-202ENST00000416769 APBA2Q99767 749 aa15.76■□□□□ 0.11
LINC00339-202ENST00000416769 BTBD7Q9P203 1132 aa15.76■□□□□ 0.11
LINC00339-202ENST00000416769 DNAH12Q6ZR08 3092 aa15.76■□□□□ 0.11
LINC00339-202ENST00000416769 IPO8O15397 1037 aaKnown RBP15.75■□□□□ 0.11
LINC00339-202ENST00000416769 MAPK4P31152 587 aa15.75■□□□□ 0.11
LINC00339-202ENST00000416769 RGS2P41220 211 aa15.75■□□□□ 0.11
LINC00339-202ENST00000416769 PLCD1P51178 756 aa15.75■□□□□ 0.11
LINC00339-202ENST00000416769 PDE3AQ14432 1141 aa15.75■□□□□ 0.11
LINC00339-202ENST00000416769 RAB3GAP1Q15042 981 aa15.75■□□□□ 0.11
LINC00339-202ENST00000416769 WDR78Q5VTH9 848 aa15.75■□□□□ 0.11
LINC00339-202ENST00000416769 TDHQ8IZJ6 230 aa15.75■□□□□ 0.11
LINC00339-202ENST00000416769 TRPV1Q8NER1 839 aa15.75■□□□□ 0.11
LINC00339-202ENST00000416769 NPLOC4Q8TAT6 608 aa15.75■□□□□ 0.11
LINC00339-202ENST00000416769 FEZ1Q99689 392 aa15.75■□□□□ 0.11
LINC00339-202ENST00000416769 UBE2OQ9C0C9 1292 aaKnown RBP15.75■□□□□ 0.11
LINC00339-202ENST00000416769 HLA-DOAP06340 250 aa15.74■□□□□ 0.11
LINC00339-202ENST00000416769 VCAM1P19320 739 aa15.74■□□□□ 0.11
LINC00339-202ENST00000416769 SHMT1P34896 483 aa15.74■□□□□ 0.11
LINC00339-202ENST00000416769 MAP2K5Q13163 448 aa15.74■□□□□ 0.11
LINC00339-202ENST00000416769 ZKSCAN2Q63HK3 967 aa15.74■□□□□ 0.11
LINC00339-202ENST00000416769 TATDN1Q6P1N9 297 aa15.74■□□□□ 0.11
LINC00339-202ENST00000416769 ZNF512BQ96KM6 892 aaPredicted RBP15.74■□□□□ 0.11
LINC00339-202ENST00000416769 C12orf42Q96LP6 360 aa15.74■□□□□ 0.11
LINC00339-202ENST00000416769 MTMR10Q9NXD2 777 aa15.74■□□□□ 0.11
LINC00339-202ENST00000416769 LAMA2P24043 3122 aaKnown RBP15.74■□□□□ 0.11
LINC00339-202ENST00000416769 NAV1Q8NEY1 1877 aa15.74■□□□□ 0.11
LINC00339-202ENST00000416769 SPDYE16A6NNV3 312 aaPredicted RBP15.73■□□□□ 0.11
LINC00339-202ENST00000416769 SMIM22K7EJ46 135 aa15.73■□□□□ 0.11
LINC00339-202ENST00000416769 CYP2C19P33261 490 aa15.73■□□□□ 0.11
LINC00339-202ENST00000416769 USP5P45974 858 aa15.73■□□□□ 0.11
LINC00339-202ENST00000416769 ATN1P54259 1190 aaPredicted RBP15.73■□□□□ 0.11
LINC00339-202ENST00000416769 LRIT3Q3SXY7 679 aa15.73■□□□□ 0.11
LINC00339-202ENST00000416769 SLFNL1Q499Z3 407 aa15.73■□□□□ 0.11
LINC00339-202ENST00000416769 KIAA1755Q5JYT7 1200 aa15.73■□□□□ 0.11
LINC00339-202ENST00000416769 CLEC10AQ8IUN9 316 aa15.73■□□□□ 0.11
LINC00339-202ENST00000416769 CCAR1Q8IX12 1150 aaKnown RBP15.73■□□□□ 0.11
LINC00339-202ENST00000416769 EXOC6BQ9Y2D4 811 aa15.73■□□□□ 0.11
LINC00339-202ENST00000416769 NOP58Q9Y2X3 529 aaKnown RBP15.73■□□□□ 0.11
LINC00339-202ENST00000416769 RLFQ13129 1914 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 A0A1W2PRG0 241 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 USP17L15C9J2P7 530 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 USP17L13C9JLJ4 530 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 USP17L11C9JVI0 530 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 USP17L18D6R9N7 530 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 USP17L22D6RA61 530 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 USP17L17D6RBQ6 530 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 USP17L19D6RCP7 530 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 USP17L20D6RJB6 530 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 CYP2D6P10635 497 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 CAPN2P17655 700 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 USP17L24Q0WX57 530 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 SEPT2Q15019 361 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 ANO1Q5XXA6 986 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 CATSPERGQ6ZRH7 1159 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 SLC44A5Q8NCS7 719 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 RIOK1Q9BRS2 568 aaKnown RBP15.72■□□□□ 0.11
LINC00339-202ENST00000416769 RPAP3Q9H6T3 665 aaPredicted RBP15.72■□□□□ 0.11
LINC00339-202ENST00000416769 SERPINB13Q9UIV8 391 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 RABGAP1Q9Y3P9 1069 aa15.72■□□□□ 0.11
LINC00339-202ENST00000416769 PTPREP23469 700 aa15.71■□□□□ 0.11
LINC00339-202ENST00000416769 ABCB5Q2M3G0 1257 aa15.71■□□□□ 0.11
LINC00339-202ENST00000416769 ITPRIPQ8IWB1 547 aa15.71■□□□□ 0.11
LINC00339-202ENST00000416769 EDC3Q96F86 508 aaKnown RBP15.71■□□□□ 0.11
LINC00339-202ENST00000416769 SENP6Q9GZR1 1112 aaPredicted RBP15.71■□□□□ 0.11
LINC00339-202ENST00000416769 GINM1Q9NU53 330 aa15.71■□□□□ 0.11
LINC00339-202ENST00000416769 UNC80Q8N2C7 3258 aa15.71■□□□□ 0.11
LINC00339-202ENST00000416769 LTBP2Q14767 1821 aa15.71■□□□□ 0.1
LINC00339-202ENST00000416769 CHGBP05060 677 aa15.7■□□□□ 0.1
LINC00339-202ENST00000416769 CERKLQ49MI3 558 aaPredicted RBP15.7■□□□□ 0.1
LINC00339-202ENST00000416769 CEP85Q6P2H3 762 aa15.7■□□□□ 0.1
LINC00339-202ENST00000416769 AACSQ86V21 672 aa15.7■□□□□ 0.1
LINC00339-202ENST00000416769 FAM161BQ96MY7 647 aa15.7■□□□□ 0.1
LINC00339-202ENST00000416769 KIAA1683Q9H0B3 1180 aa15.7■□□□□ 0.1
LINC00339-202ENST00000416769 CWC22Q9HCG8 908 aaKnown RBP15.7■□□□□ 0.1
LINC00339-202ENST00000416769 IL1RAPL2Q9NP60 686 aa15.7■□□□□ 0.1
LINC00339-202ENST00000416769 IGHA2P01877 340 aa15.69■□□□□ 0.1
LINC00339-202ENST00000416769 CNGA1P29973 690 aa15.69■□□□□ 0.1
LINC00339-202ENST00000416769 GRB14Q14449 540 aa15.69■□□□□ 0.1
LINC00339-202ENST00000416769 GJC2Q5T442 439 aaPredicted RBP15.69■□□□□ 0.1
LINC00339-202ENST00000416769 PPP4R3CPQ6ZMV5 832 aa15.69■□□□□ 0.1
LINC00339-202ENST00000416769 SDR42E1Q8WUS8 393 aa15.69■□□□□ 0.1
LINC00339-202ENST00000416769 GUCD1Q96NT3 240 aa15.69■□□□□ 0.1
LINC00339-202ENST00000416769 BCL11AQ9H165 835 aa15.69■□□□□ 0.1
LINC00339-202ENST00000416769 EHD4Q9H223 541 aa15.69■□□□□ 0.1
LINC00339-202ENST00000416769 DDX20Q9UHI6 824 aaKnown RBP15.69■□□□□ 0.1
LINC00339-202ENST00000416769 SUPT16HQ9Y5B9 1047 aaKnown RBP15.69■□□□□ 0.1
LINC00339-202ENST00000416769 A0A0G2JMZ2 1700 aa15.68■□□□□ 0.1
LINC00339-202ENST00000416769 SLC15A5A6NIM6 579 aa15.68■□□□□ 0.1
LINC00339-202ENST00000416769 MS4A1P11836 297 aa15.68■□□□□ 0.1
LINC00339-202ENST00000416769 CYBAP13498 195 aa15.68■□□□□ 0.1
LINC00339-202ENST00000416769 GABPAQ06546 454 aa15.68■□□□□ 0.1
LINC00339-202ENST00000416769 PRAMEF19Q5SWL8 479 aa15.68■□□□□ 0.1
LINC00339-202ENST00000416769 MFSD14CQ5VZR4 134 aa15.68■□□□□ 0.1
LINC00339-202ENST00000416769 TRMT44Q8IYL2 757 aaKnown RBP15.68■□□□□ 0.1
LINC00339-202ENST00000416769 PANK1Q8TE04 598 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms