RNA–Protein interactions for RNA: ENST00000416717.6

SMPD4P1-201, Transcript of sphingomyelin phosphodiesterase 4 pseudogene 1, humanhuman

BASIC

Gene SMPD4P1, Length 2,263 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4P1-201ENST00000416717 CCDC183Q5T5S1 534 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 OSBPL5Q9H0X9 879 aaPredicted RBP12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 RBM28Q9NW13 759 aaKnown RBP12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 VPS54Q9P1Q0 977 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 PIM2Q9P1W9 311 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 COL4A5P29400 1685 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 FAM196BA6NMK8 535 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 BTBD18B2RXH4 712 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 ME1P48163 572 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 EIF6P56537 245 aaKnown RBP12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 FUT2Q10981 343 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 TMTC3Q6ZXV5 915 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 DGKHQ86XP1 1220 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 CLEC10AQ8IUN9 316 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 ZSCAN29Q8IWY8 852 aaPredicted RBP12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 STAG2Q8N3U4 1231 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 TMEM47Q9BQJ4 181 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 RNF26Q9BY78 433 aaPredicted RBP12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 MTFR1LQ9H019 292 aa12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 TDRD3Q9H7E2 651 aaKnown RBP12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 ZBTB12Q9Y330 459 aaPredicted RBP12.36□□□□□ -0.43
SMPD4P1-201ENST00000416717 PSME4Q14997 1843 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 MRE11P49959 708 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 PPP2R5BQ15173 497 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 STK38Q15208 465 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 CAMK4Q16566 473 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 LRSAM1Q6UWE0 723 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 BRAPQ7Z569 592 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 CEP95Q96GE4 821 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 RCOR1Q9UKL0 485 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 PSMD14O00487 310 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 MMP1P03956 469 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 GOLGA8HP0CJ92 632 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 AKR1B1P15121 316 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 NR5A1Q13285 461 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 PKN1Q16512 942 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 CFAP100Q494V2 611 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 DIS3L2Q8IYB7 885 aaKnown RBP12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 SHISA4Q96DD7 197 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 DACT1Q9NYF0 836 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 SERPINB13Q9UIV8 391 aa12.35□□□□□ -0.43
SMPD4P1-201ENST00000416717 CNTNAP5Q8WYK1 1306 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 NR1I2O75469 434 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 VEGFAP15692 232 aaPredicted RBP12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 FKBP1AP62942 108 aaKnown RBP12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 SAFBQ15424 915 aaKnown RBP eCLIP12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 SF3A1Q15459 793 aaKnown RBP12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 RNF214Q8ND24 703 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 NEDD1Q8NHV4 660 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 OXER1Q8TDS5 423 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 PRMT6Q96LA8 375 aaPredicted RBP12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 PSMD1Q99460 953 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 RBSNQ9H1K0 784 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 CPVLQ9H3G5 476 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 MPHOSPH10O00566 681 aaKnown RBP12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 PRPF3O43395 683 aaKnown RBP12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 HLA-DOAP06340 250 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 TGFB2P61812 414 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 GABPAQ06546 454 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 DALRD3Q5D0E6 543 aaKnown RBP12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 TCP11L1Q9NUJ3 509 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 RTEL1Q9NZ71 1219 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 FAM198AQ9UFP1 575 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 SERPINA10Q9UK55 444 aa12.34□□□□□ -0.43
SMPD4P1-201ENST00000416717 MYH4Q9Y623 1939 aa12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 DDTLA6NHG4 134 aaPredicted RBP12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 ATP2B1P20020 1258 aa12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 MARCKSP29966 332 aaPredicted RBP12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 KIF5BP33176 963 aa12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 ANO1Q5XXA6 986 aa12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 ATL3Q6DD88 541 aa12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 CCAR1Q8IX12 1150 aaKnown RBP12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 LINC00301Q8NCQ3 95 aa12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 PCDHA7Q9UN72 937 aa12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 BRCA1P38398 1863 aaKnown RBP12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 SIPA1L1O43166 1804 aa12.33□□□□□ -0.44
SMPD4P1-201ENST00000416717 U2AF2P26368 475 aaKnown RBP eCLIP12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 ATP2B2Q01814 1243 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 CCDC178Q5BJE1 867 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 RSBN1LQ6PCB5 846 aaPredicted RBP12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 NIM1KQ8IY84 436 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 LRRC47Q8N1G4 583 aaKnown RBP12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 ANKS1AQ92625 1134 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 GOLPH3LQ9H4A5 285 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 MAD2L2Q9UI95 211 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 ISY1Q9ULR0 285 aaKnown RBP12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 BCS1LQ9Y276 419 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 CLRN2A0PK11 232 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 SPTLC2O15270 562 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 SHMT1P34896 483 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 HDLBPQ00341 1268 aaKnown RBP12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 GRM4Q14833 912 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 SHROOM1Q2M3G4 852 aaPredicted RBP12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 USP17L2Q6R6M4 530 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 SH3BP5LQ7L8J4 393 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 NOSTRINQ8IVI9 506 aa12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 GPKOWQ92917 476 aaPredicted RBP eCLIP12.32□□□□□ -0.44
SMPD4P1-201ENST00000416717 MRIQ9BWK5 157 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms