RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 ZNF232Q9UNY5 417 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 BMP15O95972 392 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 PLA2G1BP04054 148 aaKnown RBP0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 C1SP09871 688 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 PTPRAP18433 802 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 IGFBP6P24592 240 aaPredicted RBP0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 ABCG1P45844 678 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 FOXG1P55316 489 aaPredicted RBP0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 C1orf53Q5VUE5 145 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 Q8TCH9 128 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 NR4A3Q92570 626 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 HSPA12BQ96MM6 686 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 GPCPD1Q9NPB8 672 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 ARHGAP20Q9P2F6 1191 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 AP4E1Q9UPM8 1137 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 PMF1-BGLAPU3KQ54 211 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 ARHGEF17Q96PE2 2063 aaPredicted RBP0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 MUC16Q8WXI7 14507 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 TENM3Q9P273 2699 aa0.16□□□□□ -2.38
RNU4-88P-201ENST00000411220 SOX18P35713 384 aa0.15□□□□□ -2.39
RNU4-88P-201ENST00000411220 NCKAP1LP55160 1127 aa0.15□□□□□ -2.39
RNU4-88P-201ENST00000411220 ZNF425Q6IV72 752 aa0.15□□□□□ -2.39
RNU4-88P-201ENST00000411220 FAM124AQ86V42 546 aa0.15□□□□□ -2.39
RNU4-88P-201ENST00000411220 ARXQ96QS3 562 aa0.15□□□□□ -2.39
RNU4-88P-201ENST00000411220 ERRFI1Q9UJM3 462 aaPredicted RBP0.15□□□□□ -2.39
RNU4-88P-201ENST00000411220 NUTM2BA6NNL0 878 aaPredicted RBP0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 NUTM2EB1AL46 878 aaPredicted RBP0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 IGKV2-30P06310 120 aa0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 MCAMP43121 646 aa0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 SARSP49591 514 aaKnown RBP0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 TAF6P49848 677 aa0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 HNRNPA3P51991 378 aaKnown RBP0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 ATP11AP98196 1134 aa0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 DLX2Q07687 328 aaPredicted RBP0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 NR6A1Q15406 480 aa0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 AKAP4Q5JQC9 854 aa0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 NUTM2DQ5VT03 806 aaPredicted RBP0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 PP632Q6XCG6 107 aa0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 NUTM2AQ8IVF1 878 aaPredicted RBP0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 SRRM1Q8IYB3 904 aaKnown RBP0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 RPUSD2Q8IZ73 545 aaKnown RBP0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 ZNF276Q8N554 614 aa0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 PNMA1Q8ND90 353 aa0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 C11orf16Q9NQ32 467 aa0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 SERTAD1Q9UHV2 236 aa0.14□□□□□ -2.39
RNU4-88P-201ENST00000411220 PFKLP17858 780 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 RFX1P22670 979 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 CLCN1P35523 988 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 GALK1P51570 392 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 HTRA3P83110 453 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 HIF1AQ16665 826 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 SLC44A4Q53GD3 710 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 FAM214BQ7L5A3 538 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 TOP6BLQ8N6T0 577 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 RBMXL3Q8N7X1 1067 aaKnown RBP0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 DBF4BQ8NFT6 615 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 ADOQ96SZ5 270 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 PCDHAC2Q9Y5I4 1007 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 SPATA31A6Q5VVP1 1343 aa0.13□□□□□ -2.39
RNU4-88P-201ENST00000411220 IGKV6D-41A0A0C4DH26 115 aa0.12□□□□□ -2.39
RNU4-88P-201ENST00000411220 H3BS24 57 aa0.12□□□□□ -2.39
RNU4-88P-201ENST00000411220 HGSNATQ68CP4 663 aa0.12□□□□□ -2.39
RNU4-88P-201ENST00000411220 KIAA1161Q6NSJ0 714 aa0.12□□□□□ -2.39
RNU4-88P-201ENST00000411220 TMC6Q7Z403 805 aa0.12□□□□□ -2.39
RNU4-88P-201ENST00000411220 C1orf210Q8IVY1 113 aa0.12□□□□□ -2.39
RNU4-88P-201ENST00000411220 ADAMTS17Q8TE56 1095 aa0.12□□□□□ -2.39
RNU4-88P-201ENST00000411220 R3HDMLQ9H3Y0 253 aa0.12□□□□□ -2.39
RNU4-88P-201ENST00000411220 NTMQ9P121 344 aa0.12□□□□□ -2.39
RNU4-88P-201ENST00000411220 ZKSCAN5Q9Y2L8 839 aa0.12□□□□□ -2.39
RNU4-88P-201ENST00000411220 REXO2Q9Y3B8 237 aaKnown RBP0.12□□□□□ -2.39
RNU4-88P-201ENST00000411220 COL4A4P53420 1690 aaPredicted RBP0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 TADA3O75528 432 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 NTN1O95631 604 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 CGAP01215 116 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 ZGLP1P0C6A0 271 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 CCKARP32238 428 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 MLLT6P55198 1093 aaPredicted RBP0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 CSPP1Q1MSJ5 1256 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 RGL3Q3MIN7 710 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 GFI1BQ5VTD9 330 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 CDKAL1Q5VV42 579 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 CYB5RLQ6IPT4 315 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 HDXQ7Z353 690 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 SPPL2CQ8IUH8 684 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 ZNF414Q96IQ9 312 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 SPACA7Q96KW9 195 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 ZNF358Q9NW07 568 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 LIMD1Q9UGP4 676 aa0.11□□□□□ -2.39
RNU4-88P-201ENST00000411220 SERTM1A2A2V5 107 aa0.1□□□□□ -2.39
RNU4-88P-201ENST00000411220 FAM155AB1AL88 458 aaPredicted RBP0.1□□□□□ -2.39
RNU4-88P-201ENST00000411220 SMAD6O43541 496 aaKnown RBP0.1□□□□□ -2.39
RNU4-88P-201ENST00000411220 NAALADL2Q58DX5 795 aa0.1□□□□□ -2.39
RNU4-88P-201ENST00000411220 SH3PXD2AQ5TCZ1 1133 aa0.1□□□□□ -2.39
RNU4-88P-201ENST00000411220 IER5Q5VY09 327 aa0.1□□□□□ -2.39
RNU4-88P-201ENST00000411220 THAP5Q7Z6K1 395 aa0.1□□□□□ -2.39
RNU4-88P-201ENST00000411220 PLEKHH3Q7Z736 793 aa0.1□□□□□ -2.39
RNU4-88P-201ENST00000411220 USP48Q86UV5 1035 aa0.1□□□□□ -2.39
RNU4-88P-201ENST00000411220 SIRT2Q8IXJ6 389 aa0.1□□□□□ -2.39
RNU4-88P-201ENST00000411220 FOXQ1Q9C009 403 aa0.1□□□□□ -2.39
RNU4-88P-201ENST00000411220 SSPOA2VEC9 5147 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms