RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 CENPBP07199 599 aaPredicted RBP24.77■■□□□ 1.56
VSX1-204ENST00000409958 GSPT1P15170 499 aaKnown RBP24.77■■□□□ 1.56
VSX1-204ENST00000409958 PKN2Q16513 984 aaKnown RBP24.77■■□□□ 1.56
VSX1-204ENST00000409958 VPS53Q5VIR6 699 aa24.77■■□□□ 1.56
VSX1-204ENST00000409958 FEZ1Q99689 392 aa24.77■■□□□ 1.56
VSX1-204ENST00000409958 KIAA1683Q9H0B3 1180 aa24.77■■□□□ 1.56
VSX1-204ENST00000409958 DIAPH3Q9NSV4 1193 aa24.77■■□□□ 1.56
VSX1-204ENST00000409958 CPA4Q9UI42 421 aa24.77■■□□□ 1.56
VSX1-204ENST00000409958 CCDC171Q6TFL3 1326 aa24.76■■□□□ 1.55
VSX1-204ENST00000409958 USP14P54578 494 aa24.76■■□□□ 1.55
VSX1-204ENST00000409958 ALX1Q15699 326 aa24.76■■□□□ 1.55
VSX1-204ENST00000409958 ZNF589Q86UQ0 364 aaPredicted RBP24.76■■□□□ 1.55
VSX1-204ENST00000409958 CD99L2Q8TCZ2 262 aa24.76■■□□□ 1.55
VSX1-204ENST00000409958 ACER1Q8TDN7 264 aa24.76■■□□□ 1.55
VSX1-204ENST00000409958 C12orf42Q96LP6 360 aa24.76■■□□□ 1.55
VSX1-204ENST00000409958 MKNK2Q9HBH9 465 aa24.76■■□□□ 1.55
VSX1-204ENST00000409958 ZNF287Q9HBT7 754 aa24.76■■□□□ 1.55
VSX1-204ENST00000409958 EMILIN3Q9NT22 766 aa24.76■■□□□ 1.55
VSX1-204ENST00000409958 OSBPP22059 807 aa24.75■■□□□ 1.55
VSX1-204ENST00000409958 HOXA7P31268 230 aaPredicted RBP24.75■■□□□ 1.55
VSX1-204ENST00000409958 MFAP1P55081 439 aaKnown RBP24.75■■□□□ 1.55
VSX1-204ENST00000409958 SLC3A2P08195 630 aaKnown RBP24.74■■□□□ 1.55
VSX1-204ENST00000409958 BCRP11274 1271 aa24.74■■□□□ 1.55
VSX1-204ENST00000409958 RASA1P20936 1047 aa24.74■■□□□ 1.55
VSX1-204ENST00000409958 PPARAQ07869 468 aa24.74■■□□□ 1.55
VSX1-204ENST00000409958 STK11IPQ8N1F8 1099 aa24.74■■□□□ 1.55
VSX1-204ENST00000409958 SMCR8Q8TEV9 937 aaPredicted RBP24.74■■□□□ 1.55
VSX1-204ENST00000409958 HSPD1P10809 573 aaKnown RBP24.73■■□□□ 1.55
VSX1-204ENST00000409958 LACTBP83111 547 aaPredicted RBP24.73■■□□□ 1.55
VSX1-204ENST00000409958 ARHGEF6Q15052 776 aa24.73■■□□□ 1.55
VSX1-204ENST00000409958 CWC27Q6UX04 472 aaKnown RBP24.73■■□□□ 1.55
VSX1-204ENST00000409958 ASCC2Q9H1I8 757 aaPredicted RBP24.73■■□□□ 1.55
VSX1-204ENST00000409958 TRIM17Q9Y577 477 aa24.73■■□□□ 1.55
VSX1-204ENST00000409958 A0A1W2PRG0 241 aa24.72■■□□□ 1.55
VSX1-204ENST00000409958 ICA1Q05084 483 aa24.72■■□□□ 1.55
VSX1-204ENST00000409958 PDE4BQ07343 736 aa24.72■■□□□ 1.55
VSX1-204ENST00000409958 KIF22Q14807 665 aa24.72■■□□□ 1.55
VSX1-204ENST00000409958 ZYXQ15942 572 aaKnown RBP24.72■■□□□ 1.55
VSX1-204ENST00000409958 OTOP1Q7RTM1 612 aa24.72■■□□□ 1.55
VSX1-204ENST00000409958 KANSL2Q9H9L4 492 aa24.72■■□□□ 1.55
VSX1-204ENST00000409958 EFCC1Q9HA90 598 aa24.72■■□□□ 1.55
VSX1-204ENST00000409958 ARHGEF10LQ9HCE6 1279 aa24.72■■□□□ 1.55
VSX1-204ENST00000409958 ZMYM6O95789 1325 aa24.71■■□□□ 1.55
VSX1-204ENST00000409958 IRX3P78415 501 aaPredicted RBP24.71■■□□□ 1.55
VSX1-204ENST00000409958 CAP1Q01518 475 aa24.71■■□□□ 1.55
VSX1-204ENST00000409958 SIAH1Q8IUQ4 282 aa24.71■■□□□ 1.55
VSX1-204ENST00000409958 CCDC136Q96JN2 1154 aa24.71■■□□□ 1.55
VSX1-204ENST00000409958 FGAP02671 866 aa24.7■■□□□ 1.54
VSX1-204ENST00000409958 GCLCP48506 637 aaPredicted RBP24.7■■□□□ 1.54
VSX1-204ENST00000409958 FBXO46Q6PJ61 603 aaPredicted RBP24.7■■□□□ 1.54
VSX1-204ENST00000409958 ZNF444Q8N0Y2 327 aaPredicted RBP24.7■■□□□ 1.54
VSX1-204ENST00000409958 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.7■■□□□ 1.54
VSX1-204ENST00000409958 SH2D4AQ9H788 454 aa24.7■■□□□ 1.54
VSX1-204ENST00000409958 ANAPC4Q9UJX5 808 aa24.7■■□□□ 1.54
VSX1-204ENST00000409958 CCDC85CA6NKD9 419 aa24.69■■□□□ 1.54
VSX1-204ENST00000409958 PRDM1O75626 825 aa24.69■■□□□ 1.54
VSX1-204ENST00000409958 CLEC10AQ8IUN9 316 aa24.69■■□□□ 1.54
VSX1-204ENST00000409958 TMX2Q9Y320 296 aa24.69■■□□□ 1.54
VSX1-204ENST00000409958 GREB1LQ9C091 1923 aaPredicted RBP24.68■■□□□ 1.54
VSX1-204ENST00000409958 VCAM1P19320 739 aa24.68■■□□□ 1.54
VSX1-204ENST00000409958 USP17L15C9J2P7 530 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 USP17L13C9JLJ4 530 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 USP17L11C9JVI0 530 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 USP17L18D6R9N7 530 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 USP17L22D6RA61 530 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 USP17L17D6RBQ6 530 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 USP17L19D6RCP7 530 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 USP17L20D6RJB6 530 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 GNRH1P01148 92 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 EEF2P13639 858 aaKnown RBP24.67■■□□□ 1.54
VSX1-204ENST00000409958 USP17L24Q0WX57 530 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 FAM110CQ1W6H9 321 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 ANKRD13CQ8N6S4 541 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 P2RX7Q99572 595 aaKnown RBP24.67■■□□□ 1.54
VSX1-204ENST00000409958 ARHGAP39Q9C0H5 1083 aa24.67■■□□□ 1.54
VSX1-204ENST00000409958 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.67■■□□□ 1.54
VSX1-204ENST00000409958 PSMC4P43686 418 aa24.66■■□□□ 1.54
VSX1-204ENST00000409958 CTDSPL2Q05D32 466 aa24.66■■□□□ 1.54
VSX1-204ENST00000409958 CATSPERGQ6ZRH7 1159 aa24.66■■□□□ 1.54
VSX1-204ENST00000409958 GTF3C2Q8WUA4 911 aaPredicted RBP24.66■■□□□ 1.54
VSX1-204ENST00000409958 LPAR1Q92633 364 aa24.66■■□□□ 1.54
VSX1-204ENST00000409958 PLIN4Q96Q06 1357 aa24.65■■□□□ 1.54
VSX1-204ENST00000409958 IGKV6D-41A0A0C4DH26 115 aa24.65■■□□□ 1.54
VSX1-204ENST00000409958 ECM2O94769 699 aaPredicted RBP24.65■■□□□ 1.54
VSX1-204ENST00000409958 CTGFP29279 349 aa24.65■■□□□ 1.54
VSX1-204ENST00000409958 HERVK_113P62684 666 aa24.65■■□□□ 1.54
VSX1-204ENST00000409958 ATP2B2Q01814 1243 aa24.65■■□□□ 1.54
VSX1-204ENST00000409958 NEDD1Q8NHV4 660 aa24.65■■□□□ 1.54
VSX1-204ENST00000409958 VCPKMTQ9H867 229 aa24.65■■□□□ 1.54
VSX1-204ENST00000409958 NYAP2Q9P242 653 aa24.65■■□□□ 1.54
VSX1-204ENST00000409958 PTPN22Q9Y2R2 807 aa24.65■■□□□ 1.54
VSX1-204ENST00000409958 RAD50Q92878 1312 aa24.65■■□□□ 1.54
VSX1-204ENST00000409958 FGRP09769 529 aa24.64■■□□□ 1.54
VSX1-204ENST00000409958 CHMLP26374 656 aa24.64■■□□□ 1.54
VSX1-204ENST00000409958 RUFY2Q8WXA3 655 aa24.64■■□□□ 1.54
VSX1-204ENST00000409958 TRIM47Q96LD4 638 aa24.64■■□□□ 1.54
VSX1-204ENST00000409958 DSCC1Q9BVC3 393 aa24.64■■□□□ 1.54
VSX1-204ENST00000409958 RPAP3Q9H6T3 665 aaPredicted RBP24.64■■□□□ 1.54
VSX1-204ENST00000409958 MORF4L1Q9UBU8 362 aa24.64■■□□□ 1.54
VSX1-204ENST00000409958 HPS5Q9UPZ3 1129 aa24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms