RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TSPY3P0CV98 308 aa15.73■□□□□ 0.11
LIMS1-204ENST00000409441 TSPY8P0CW00 308 aa15.73■□□□□ 0.11
LIMS1-204ENST00000409441 PSMA5P28066 241 aa15.73■□□□□ 0.11
LIMS1-204ENST00000409441 ANKRD13AQ8IZ07 590 aa15.73■□□□□ 0.11
LIMS1-204ENST00000409441 NEDD1Q8NHV4 660 aa15.73■□□□□ 0.11
LIMS1-204ENST00000409441 ZSCAN31Q96LW9 406 aaPredicted RBP15.73■□□□□ 0.11
LIMS1-204ENST00000409441 JAKMIP1Q96N16 626 aaKnown RBP15.73■□□□□ 0.11
LIMS1-204ENST00000409441 ZDHHC9Q9Y397 364 aa15.73■□□□□ 0.11
LIMS1-204ENST00000409441 CYP46A1Q9Y6A2 500 aa15.73■□□□□ 0.11
LIMS1-204ENST00000409441 GOLGA6L3A6NEY3 463 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 BRD1O95696 1058 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 CASTP20810 708 aaKnown RBP15.72■□□□□ 0.11
LIMS1-204ENST00000409441 NT5C2P49902 561 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 AK2P54819 239 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 COL9A3Q14050 684 aaPredicted RBP15.72■□□□□ 0.11
LIMS1-204ENST00000409441 KLHL40Q2TBA0 621 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 SCYL3Q8IZE3 742 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.72■□□□□ 0.11
LIMS1-204ENST00000409441 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.72■□□□□ 0.11
LIMS1-204ENST00000409441 CSADQ9Y600 493 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 UNCXA6NJT0 531 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 TMEM88BA6NKF7 163 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 ASNSP08243 561 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 PKP1Q13835 747 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 VGLL4Q14135 290 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 TMEM179Q6ZVK1 233 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 RUFY3Q7L099 469 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 CYB5R4Q7L1T6 521 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 CHST3Q7LGC8 479 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 MB21D2Q8IYB1 491 aaPredicted RBP15.72■□□□□ 0.11
LIMS1-204ENST00000409441 CLMNQ96JQ2 1002 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 ALDH8A1Q9H2A2 487 aaPredicted RBP15.72■□□□□ 0.11
LIMS1-204ENST00000409441 PICK1Q9NRD5 415 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 SH2B1Q9NRF2 756 aaPredicted RBP15.72■□□□□ 0.11
LIMS1-204ENST00000409441 GINM1Q9NU53 330 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 ZBTB21Q9ULJ3 1066 aa15.72■□□□□ 0.11
LIMS1-204ENST00000409441 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.72■□□□□ 0.11
LIMS1-204ENST00000409441 LAMB1P07942 1786 aa15.71■□□□□ 0.11
LIMS1-204ENST00000409441 HMGB1P09429 215 aaKnown RBP15.71■□□□□ 0.11
LIMS1-204ENST00000409441 GUCY1A2P33402 732 aa15.71■□□□□ 0.11
LIMS1-204ENST00000409441 MCM5P33992 734 aa15.71■□□□□ 0.11
LIMS1-204ENST00000409441 SEPT2Q15019 361 aa15.71■□□□□ 0.11
LIMS1-204ENST00000409441 NOL9Q5SY16 702 aaKnown RBP15.71■□□□□ 0.11
LIMS1-204ENST00000409441 MCTP1Q6DN14 999 aa15.71■□□□□ 0.11
LIMS1-204ENST00000409441 DHX32Q7L7V1 743 aaKnown RBP15.71■□□□□ 0.11
LIMS1-204ENST00000409441 SLC10A4Q96EP9 437 aa15.71■□□□□ 0.11
LIMS1-204ENST00000409441 ZKSCAN3Q9BRR0 538 aa15.71■□□□□ 0.11
LIMS1-204ENST00000409441 IL17RBQ9NRM6 502 aa15.71■□□□□ 0.11
LIMS1-204ENST00000409441 PDRG1Q9NUG6 133 aa15.71■□□□□ 0.11
LIMS1-204ENST00000409441 NMT2O60551 498 aa15.7■□□□□ 0.1
LIMS1-204ENST00000409441 CPA1P15085 419 aa15.7■□□□□ 0.1
LIMS1-204ENST00000409441 HUNKP57058 714 aa15.7■□□□□ 0.1
LIMS1-204ENST00000409441 EXOSC10Q01780 885 aaKnown RBP15.7■□□□□ 0.1
LIMS1-204ENST00000409441 BLOC1S2Q6QNY1 142 aa15.7■□□□□ 0.1
LIMS1-204ENST00000409441 NOL8Q76FK4 1167 aaKnown RBP15.7■□□□□ 0.1
LIMS1-204ENST00000409441 SAPCD2Q86UD0 394 aa15.7■□□□□ 0.1
LIMS1-204ENST00000409441 IQCA1Q86XH1 822 aa15.7■□□□□ 0.1
LIMS1-204ENST00000409441 KANSL2Q9H9L4 492 aa15.7■□□□□ 0.1
LIMS1-204ENST00000409441 ELP3Q9H9T3 547 aa15.7■□□□□ 0.1
LIMS1-204ENST00000409441 TCP11L1Q9NUJ3 509 aa15.7■□□□□ 0.1
LIMS1-204ENST00000409441 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.7■□□□□ 0.1
LIMS1-204ENST00000409441 SNCAIPQ9Y6H5 919 aa15.7■□□□□ 0.1
LIMS1-204ENST00000409441 WDR33Q9C0J8 1336 aaKnown RBP15.7■□□□□ 0.1
LIMS1-204ENST00000409441 LAMA4Q16363 1823 aa15.69■□□□□ 0.1
LIMS1-204ENST00000409441 IGKV6D-41A0A0C4DH26 115 aa15.69■□□□□ 0.1
LIMS1-204ENST00000409441 PTPRAP18433 802 aa15.69■□□□□ 0.1
LIMS1-204ENST00000409441 APLP1P51693 650 aa15.69■□□□□ 0.1
LIMS1-204ENST00000409441 ANTXR2P58335 489 aa15.69■□□□□ 0.1
LIMS1-204ENST00000409441 CEP95Q96GE4 821 aa15.69■□□□□ 0.1
LIMS1-204ENST00000409441 ZSCAN10Q96SZ4 725 aaPredicted RBP15.69■□□□□ 0.1
LIMS1-204ENST00000409441 UBAC1Q9BSL1 405 aa15.69■□□□□ 0.1
LIMS1-204ENST00000409441 GZF1Q9H116 711 aaPredicted RBP15.69■□□□□ 0.1
LIMS1-204ENST00000409441 LMBRD1Q9NUN5 540 aa15.69■□□□□ 0.1
LIMS1-204ENST00000409441 MTMR4Q9NYA4 1195 aa15.69■□□□□ 0.1
LIMS1-204ENST00000409441 ZHX2Q9Y6X8 837 aa15.69■□□□□ 0.1
LIMS1-204ENST00000409441 USP17L5A8MUK1 530 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 PRC1O43663 620 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 ANKRD1Q15327 319 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 CCDC84Q86UT8 332 aaPredicted RBP15.68■□□□□ 0.1
LIMS1-204ENST00000409441 SIAH1Q8IUQ4 282 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 ABT1Q9ULW3 272 aaKnown RBP15.68■□□□□ 0.1
LIMS1-204ENST00000409441 TLL2Q9Y6L7 1015 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 IFIT3O14879 490 aaKnown RBP15.68■□□□□ 0.1
LIMS1-204ENST00000409441 RPS6KB1P23443 525 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 CCDC178Q5BJE1 867 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 ERO1BQ86YB8 467 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 CLEC10AQ8IUN9 316 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 IGDCC4Q8TDY8 1250 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 TCEANC2Q96MN5 208 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 CLIP2Q9UDT6 1046 aa15.68■□□□□ 0.1
LIMS1-204ENST00000409441 DDX49Q9Y6V7 483 aaKnown RBP15.68■□□□□ 0.1
LIMS1-204ENST00000409441 PAPPA2Q9BXP8 1791 aa15.67■□□□□ 0.1
LIMS1-204ENST00000409441 PLIN4Q96Q06 1357 aa15.67■□□□□ 0.1
LIMS1-204ENST00000409441 ABCB7O75027 752 aa15.67■□□□□ 0.1
LIMS1-204ENST00000409441 EEF2P13639 858 aaKnown RBP15.67■□□□□ 0.1
LIMS1-204ENST00000409441 PDIA4P13667 645 aaKnown RBP15.67■□□□□ 0.1
LIMS1-204ENST00000409441 MRE11P49959 708 aa15.67■□□□□ 0.1
LIMS1-204ENST00000409441 ATP2B2Q01814 1243 aa15.67■□□□□ 0.1
LIMS1-204ENST00000409441 ICA1Q05084 483 aa15.67■□□□□ 0.1
LIMS1-204ENST00000409441 SART3Q15020 963 aaKnown RBP15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms