RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 FBXO38Q6PIJ6 1188 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 RSRC2Q7L4I2 434 aaKnown RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 FAM177A1Q8N128 213 aaPredicted RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 MARCH10Q8NA82 808 aaPredicted RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 LRRN4CLQ8ND94 238 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 CNNM3Q8NE01 707 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 HELBQ8NG08 1087 aaPredicted RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 FERMT2Q96AC1 680 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 SRRTQ9BXP5 876 aaKnown RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 CSRNP2Q9H175 543 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 CEP131Q9UPN4 1083 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 CNTNAP4Q9C0A0 1308 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 KIF13BQ9NQT8 1826 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 WNT7AO00755 349 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 TADA3O75528 432 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 SMC2O95347 1197 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 BMP15O95972 392 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 SLFN14P0C7P3 912 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 CALM1P0DP23 149 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 CALM2P0DP24 149 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 CALM3P0DP25 149 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 PDXDC2PQ6P474 469 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 CTR9Q6PD62 1173 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 OLFM4Q6UX06 510 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 TMTC3Q6ZXV5 915 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 PAGE5Q96GU1 130 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 DACH1Q9UI36 760 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 KCNJ14Q9UNX9 436 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 C10orf71Q711Q0 1435 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 TNKSO95271 1327 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 LOC102724428A0A0B4J2F2 783 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 MAGEB6P1A0A0J9YX57 407 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 SNAP23O00161 211 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 ATP8B1O43520 1251 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 APPP05067 770 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 CD44P16070 742 aaKnown RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 TRAPPC10P48553 1259 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 SIK1P57059 783 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 NR5A1Q13285 461 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 SART3Q15020 963 aaKnown RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 IL17AQ16552 155 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 SPECC1LQ69YQ0 1117 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 NFXL1Q6ZNB6 911 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 C3orf67Q6ZVT6 689 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 TRIM22Q8IYM9 498 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 NSUN4Q96CB9 384 aaKnown RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 FAM84BQ96KN1 310 aaPredicted RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 GSDMAQ96QA5 445 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 SH3GLB2Q9NR46 395 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 ADD3Q9UEY8 706 aaKnown RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 DNAI1Q9UI46 699 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 HOOK1Q9UJC3 728 aaKnown RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 IQSEC3Q9UPP2 1182 aaPredicted RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 PPP2R2CQ9Y2T4 447 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 FHOD1Q9Y613 1164 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 ARFGEF1Q9Y6D6 1849 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 GOLGA6L9A6NEM1 432 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 POLR2DO15514 142 aaKnown RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 KIF20AO95235 890 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 IGHMBP2P38935 993 aaKnown RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 NOVP48745 357 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 CBX1P83916 185 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 SPATA1Q5VX52 437 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 USP49Q70CQ1 688 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 DAGLBQ8NCG7 672 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 ESR2Q92731 530 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 MPHOSPH8Q99549 860 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 NAA15Q9BXJ9 866 aaKnown RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 TCP11L1Q9NUJ3 509 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 TRMT1Q9NXH9 659 aaKnown RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 NRXN2Q9P2S2 1712 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 LIMA1Q9UHB6 759 aaKnown RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 MINPP1Q9UNW1 487 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 MYH7BA7E2Y1 1941 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 EFCAB8A8MWE9 144 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 SMIM22K7EJ46 135 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 ZSCAN12O43309 604 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 TM4SF1P30408 202 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 KRT2P35908 639 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 SAFBQ15424 915 aaKnown RBP eCLIP4.41□□□□□ -1.71e-6■■□□□ 14.5
RTN4-209ENST00000405240 RCSD1Q6JBY9 416 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 SYT10Q6XYQ8 523 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 NUTM2AQ8IVF1 878 aaPredicted RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 MSL3Q8N5Y2 521 aaKnown RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 SMARCE1Q969G3 411 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 MTRQ99707 1265 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 MRFAP1Q9Y605 127 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 FAM205CA6NFA0 338 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 CYP7A1P22680 504 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 ELF2Q15723 593 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 RC3H1Q5TC82 1133 aaKnown RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 ARL6IP4Q66PJ3 421 aaKnown RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 C15orf52Q6ZUT6 534 aaKnown RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 CREBRFQ8IUR6 639 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 SRBD1Q8N5C6 995 aaKnown RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 RAI14Q9P0K7 980 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 XDHP47989 1333 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 TOP1P11387 765 aaKnown RBP4.41□□□□□ -1.7
RTN4-209ENST00000405240 ATP6V1AP38606 617 aa4.41□□□□□ -1.7
RTN4-209ENST00000405240 TDO2P48775 406 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms