RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 IFIT1BQ5T764 474 aaKnown RBP16.66■□□□□ 0.26
SKA1-202ENST00000398452 CYB5R4Q7L1T6 521 aa16.66■□□□□ 0.26
SKA1-202ENST00000398452 PLCD3Q8N3E9 789 aa16.66■□□□□ 0.26
SKA1-202ENST00000398452 SLC44A5Q8NCS7 719 aa16.66■□□□□ 0.26
SKA1-202ENST00000398452 CDK5RAP2Q96SN8 1893 aa16.66■□□□□ 0.26
SKA1-202ENST00000398452 ZKSCAN3Q9BRR0 538 aa16.66■□□□□ 0.26
SKA1-202ENST00000398452 SMIM22K7EJ46 135 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 SH2B2O14492 632 aaPredicted RBP16.65■□□□□ 0.26
SKA1-202ENST00000398452 FOXN1O15353 648 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 TBC1D12O60347 775 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 NF2P35240 595 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 LIFRP42702 1097 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 HIRAP54198 1017 aaPredicted RBP16.65■□□□□ 0.26
SKA1-202ENST00000398452 SH3BP5LQ7L8J4 393 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 FBXL16Q8N461 479 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 NEDD1Q8NHV4 660 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 MS4A3Q96HJ5 214 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 SLKQ9H2G2 1235 aaPredicted RBP16.65■□□□□ 0.26
SKA1-202ENST00000398452 ZNF408Q9H9D4 720 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 SLC12A7Q9Y666 1083 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 ASTN2O75129 1339 aaPredicted RBP16.65■□□□□ 0.26
SKA1-202ENST00000398452 TNKSO95271 1327 aa16.65■□□□□ 0.26
SKA1-202ENST00000398452 KLF18A0A0U1RQI7 1052 aa16.64■□□□□ 0.25
SKA1-202ENST00000398452 ANTXR2P58335 489 aa16.64■□□□□ 0.25
SKA1-202ENST00000398452 TOB2Q14106 344 aaPredicted RBP16.64■□□□□ 0.25
SKA1-202ENST00000398452 CATIPQ7Z7H3 387 aa16.64■□□□□ 0.25
SKA1-202ENST00000398452 GLIS2Q9BZE0 524 aaPredicted RBP16.64■□□□□ 0.25
SKA1-202ENST00000398452 KAT14Q9H8E8 782 aa16.64■□□□□ 0.25
SKA1-202ENST00000398452 TCP11L1Q9NUJ3 509 aa16.64■□□□□ 0.25
SKA1-202ENST00000398452 STX8Q9UNK0 236 aa16.64■□□□□ 0.25
SKA1-202ENST00000398452 DDX60LQ5H9U9 1706 aaKnown RBP16.64■□□□□ 0.25
SKA1-202ENST00000398452 DHX16O60231 1041 aaKnown RBP16.63■□□□□ 0.25
SKA1-202ENST00000398452 CD2BP2O95400 341 aaKnown RBP16.63■□□□□ 0.25
SKA1-202ENST00000398452 SHMT1P34896 483 aa16.63■□□□□ 0.25
SKA1-202ENST00000398452 APOBRQ0VD83 1088 aa16.63■□□□□ 0.25
SKA1-202ENST00000398452 ABCB5Q2M3G0 1257 aa16.63■□□□□ 0.25
SKA1-202ENST00000398452 CPLX2Q6PUV4 134 aaKnown RBP16.63■□□□□ 0.25
SKA1-202ENST00000398452 KRT26Q7Z3Y9 468 aa16.63■□□□□ 0.25
SKA1-202ENST00000398452 DGKHQ86XP1 1220 aa16.63■□□□□ 0.25
SKA1-202ENST00000398452 TMX3Q96JJ7 454 aa16.63■□□□□ 0.25
SKA1-202ENST00000398452 ZNF341Q9BYN7 854 aa16.63■□□□□ 0.25
SKA1-202ENST00000398452 AGXT2Q9BYV1 514 aa16.63■□□□□ 0.25
SKA1-202ENST00000398452 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.63■□□□□ 0.25
SKA1-202ENST00000398452 TACC3Q9Y6A5 838 aa16.63■□□□□ 0.25
SKA1-202ENST00000398452 FAM196BA6NMK8 535 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 GOLGA8BA8MQT2 603 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 CALM1P0DP23 149 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 CALM2P0DP24 149 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 CALM3P0DP25 149 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 STK3Q13188 491 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 TATDN1Q6P1N9 297 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 TMEM179Q6ZVK1 233 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 CDC37L1Q7L3B6 337 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 MIGA2Q7L4E1 593 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 METTL16Q86W50 562 aaKnown RBP16.62■□□□□ 0.25
SKA1-202ENST00000398452 IGDCC4Q8TDY8 1250 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 ZNF274Q96GC6 653 aaPredicted RBP16.62■□□□□ 0.25
SKA1-202ENST00000398452 LARP6Q9BRS8 491 aaKnown RBP16.62■□□□□ 0.25
SKA1-202ENST00000398452 TPCN1Q9ULQ1 816 aa16.62■□□□□ 0.25
SKA1-202ENST00000398452 SCAF8Q9UPN6 1271 aaKnown RBP16.62■□□□□ 0.25
SKA1-202ENST00000398452 WDR33Q9C0J8 1336 aaKnown RBP16.62■□□□□ 0.25
SKA1-202ENST00000398452 RASSF10A6NK89 507 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 CPLX1O14810 134 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 ZBTB43O43298 467 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 CELF2O95319 508 aaKnown RBP16.61■□□□□ 0.25
SKA1-202ENST00000398452 AKR1B1P15121 316 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 ATP2B2Q01814 1243 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 CST9Q5W186 159 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 CYP4F22Q6NT55 531 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 DLK2Q6UY11 383 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 USP48Q86UV5 1035 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 SGMS1Q86VZ5 419 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 ENAHQ8N8S7 591 aaPredicted RBP16.61■□□□□ 0.25
SKA1-202ENST00000398452 KANSL2Q9H9L4 492 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 LY9Q9HBG7 655 aa16.61■□□□□ 0.25
SKA1-202ENST00000398452 CCDC196A0A1B0GTZ2 297 aa16.6■□□□□ 0.25
SKA1-202ENST00000398452 PPP1R12BO60237 982 aaPredicted RBP16.6■□□□□ 0.25
SKA1-202ENST00000398452 GDF11O95390 407 aa16.6■□□□□ 0.25
SKA1-202ENST00000398452 TTLL1O95922 423 aa16.6■□□□□ 0.25
SKA1-202ENST00000398452 SLC4A3P48751 1232 aa16.6■□□□□ 0.25
SKA1-202ENST00000398452 METAP2P50579 478 aaKnown RBP eCLIP16.6■□□□□ 0.25
SKA1-202ENST00000398452 RAB3GAP1Q15042 981 aa16.6■□□□□ 0.25
SKA1-202ENST00000398452 NBPF12Q5TAG4 269 aaPredicted RBP16.6■□□□□ 0.25
SKA1-202ENST00000398452 ASTLQ6HA08 431 aaPredicted RBP16.6■□□□□ 0.25
SKA1-202ENST00000398452 SPRYD3Q8NCJ5 442 aa16.6■□□□□ 0.25
SKA1-202ENST00000398452 NUP133Q8WUM0 1156 aa16.6■□□□□ 0.25
SKA1-202ENST00000398452 DNAJC18Q9H819 358 aa16.6■□□□□ 0.25
SKA1-202ENST00000398452 GINM1Q9NU53 330 aa16.6■□□□□ 0.25
SKA1-202ENST00000398452 GOLGA8AA7E2F4 631 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 CDKL5O76039 1030 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 DDAH1O94760 285 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 ASNSP08243 561 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 TOP1P11387 765 aaKnown RBP16.59■□□□□ 0.25
SKA1-202ENST00000398452 LBX1P52954 281 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 RCAN1P53805 252 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 PPP2R5BQ15173 497 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 ME3Q16798 604 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 MICU3Q86XE3 530 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 CCDC83Q8IWF9 413 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 ZNF654Q8IZM8 581 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms