RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 KLHL7Q8IXQ5 586 aa12.33□□□□□ -0.44
HPS4-202ENST00000398145 CCDC65Q8IXS2 484 aa12.33□□□□□ -0.44
HPS4-202ENST00000398145 NAP1L3Q99457 506 aaPredicted RBP12.33□□□□□ -0.44
HPS4-202ENST00000398145 CALCOCO2Q13137 446 aa12.33□□□□□ -0.44
HPS4-202ENST00000398145 SPATS2Q86XZ4 545 aaKnown RBP12.33□□□□□ -0.44
HPS4-202ENST00000398145 NIP7Q9Y221 180 aaKnown RBP eCLIP12.33□□□□□ -0.44
HPS4-202ENST00000398145 MAST3O60307 1309 aa12.33□□□□□ -0.44
HPS4-202ENST00000398145 CEP104O60308 925 aa12.33□□□□□ -0.44
HPS4-202ENST00000398145 RNF40O75150 1001 aa12.33□□□□□ -0.44
HPS4-202ENST00000398145 C6orf163Q5TEZ5 329 aa12.33□□□□□ -0.44
HPS4-202ENST00000398145 HS2ST1Q7LGA3 356 aa12.33□□□□□ -0.44
HPS4-202ENST00000398145 CCDC25Q86WR0 208 aa12.33□□□□□ -0.44
HPS4-202ENST00000398145 CABLES1Q8TDN4 633 aa12.33□□□□□ -0.44
HPS4-202ENST00000398145 HYOU1Q9Y4L1 999 aa12.33□□□□□ -0.44
HPS4-202ENST00000398145 CDC42BPAQ5VT25 1732 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 MYO1CO00159 1063 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 LACTBP83111 547 aaPredicted RBP12.32□□□□□ -0.44
HPS4-202ENST00000398145 RRAGAQ7L523 313 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 EFCAB13Q8IY85 973 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 GPR108Q9NPR9 543 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 ACTN4O43707 911 aaKnown RBP12.32□□□□□ -0.44
HPS4-202ENST00000398145 PPFIA4O75335 1185 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 RPL13P26373 211 aaKnown RBP12.32□□□□□ -0.44
HPS4-202ENST00000398145 RBL2Q08999 1139 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 CC2D1AQ6P1N0 951 aaPredicted RBP12.32□□□□□ -0.44
HPS4-202ENST00000398145 MYCBPQ99417 103 aaPredicted RBP12.32□□□□□ -0.44
HPS4-202ENST00000398145 SH3TC1Q8TE82 1336 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 IL2RBP14784 551 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 COPB1P53618 953 aaKnown RBP12.32□□□□□ -0.44
HPS4-202ENST00000398145 CASP8Q14790 479 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 RPS6KA1Q15418 735 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 LRRC24Q50LG9 513 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 CMTR1Q8N1G2 835 aaKnown RBP12.32□□□□□ -0.44
HPS4-202ENST00000398145 SPATA5Q8NB90 893 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 IFT74Q96LB3 600 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 KCNK9Q9NPC2 374 aa12.32□□□□□ -0.44
HPS4-202ENST00000398145 CTIFO43310 598 aaKnown RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 GTPBP6O43824 516 aaPredicted RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 PDE6AP16499 860 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 DESP17661 470 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 ATP1A2P50993 1020 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 MAP3K9P80192 1104 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 NUCKS1Q9H1E3 243 aaKnown RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 FBXO3Q9UK99 471 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 MTUS1Q9ULD2 1270 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 UTP11Q9Y3A2 253 aaKnown RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 ENC1O14682 589 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 ATP6V1AP38606 617 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 CLNS1AP54105 237 aaKnown RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 PNMA8AQ86V59 439 aaPredicted RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 FMR1NBQ8N0W7 255 aaPredicted RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 EFCC1Q9HA90 598 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 PPANQ9NQ55 473 aaKnown RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 SOWAHDA6NJG2 315 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 CETN3O15182 167 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 PDE8AO60658 829 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 KRT71Q3SY84 523 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 DCAF17Q5H9S7 520 aaPredicted RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 GPIHBP1Q8IV16 184 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 FMNL3Q8IVF7 1028 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 IFNL3Q8IZI9 196 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.31□□□□□ -0.44
HPS4-202ENST00000398145 FOXP1Q9H334 677 aaPredicted RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 SAMSN1Q9NSI8 373 aaKnown RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 MAN1B1Q9UKM7 699 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 ADCY10Q96PN6 1610 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 RPAP1Q9BWH6 1393 aaPredicted RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 A0A087WUV0 522 aaPredicted RBP12.31□□□□□ -0.44
HPS4-202ENST00000398145 KLHL30Q0D2K2 578 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 MTMR3Q13615 1198 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 SETDB1Q15047 1291 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 PANX2Q96RD6 677 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 REREQ9P2R6 1566 aa12.31□□□□□ -0.44
HPS4-202ENST00000398145 TXKP42681 527 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 ASIC2Q16515 512 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 CCDC174Q6PII3 467 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 SMARCC2Q8TAQ2 1214 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 NLRP3Q96P20 1036 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 EHMT1Q9H9B1 1298 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 JRKLQ9Y4A0 524 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.3□□□□□ -0.44
HPS4-202ENST00000398145 SHROOM2Q13796 1616 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 MADDQ8WXG6 1647 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 PCDH11XQ9BZA7 1347 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 PCDH11YQ9BZA8 1340 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 UNC13BO14795 1591 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 ARHGAP31Q2M1Z3 1444 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 HLA-DOAP06340 250 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 ERCC3P19447 782 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 GUCY2FP51841 1108 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 CEP85LQ5SZL2 805 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 CROCCP2Q86T23 111 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 SYMPKQ92797 1274 aaKnown RBP12.3□□□□□ -0.44
HPS4-202ENST00000398145 BPIFA3Q9BQP9 254 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 TRIM31Q9BZY9 425 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 CSRNP2Q9H175 543 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 GOLPH3LQ9H4A5 285 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 NLRC4Q9NPP4 1024 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 TMOD2Q9NZR1 351 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 IKBKGQ9Y6K9 419 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms