RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 LRRC27Q9C0I9 530 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 BICDL2A1A5D9 508 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 HLA-DOAP06340 250 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 IFI16Q16666 785 aaKnown RBP12.08□□□□□ -0.48
CCDC40-204ENST00000397545 CCDC25Q86WR0 208 aa12.08□□□□□ -0.48
CCDC40-204ENST00000397545 TXKP42681 527 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 RAD51AP2Q09MP3 1159 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 DPCR1Q3MIW9 517 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 UTP14CQ5TAP6 766 aaKnown RBP12.07□□□□□ -0.48
CCDC40-204ENST00000397545 ZNF622Q969S3 477 aaKnown RBP eCLIP12.07□□□□□ -0.48
CCDC40-204ENST00000397545 SELENOSQ9BQE4 189 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.07□□□□□ -0.48
CCDC40-204ENST00000397545 PFKFB2O60825 505 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 PTPN12Q05209 780 aaKnown RBP12.07□□□□□ -0.48
CCDC40-204ENST00000397545 DCAF17Q5H9S7 520 aaPredicted RBP12.07□□□□□ -0.48
CCDC40-204ENST00000397545 AKNAD1Q5T1N1 836 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 WDR78Q5VTH9 848 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 CPLX4Q7Z7G2 160 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 DSCC1Q9BVC3 393 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 NBPF26B4DH59 902 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 PDIA3P30101 505 aaKnown RBP12.07□□□□□ -0.48
CCDC40-204ENST00000397545 PAK1Q13153 545 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 ARID5BQ14865 1188 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 NBPF14Q5TI25 921 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 NBPF10Q6P3W6 841 aaKnown RBP12.07□□□□□ -0.48
CCDC40-204ENST00000397545 NBPF15Q8N660 670 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 TFCP2L1Q9NZI6 479 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 PCDHA5Q9Y5H7 936 aa12.07□□□□□ -0.48
CCDC40-204ENST00000397545 TTC31Q49AM3 519 aaPredicted RBP12.06□□□□□ -0.48
CCDC40-204ENST00000397545 DYMQ7RTS9 669 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 RRP36Q96EU6 259 aaKnown RBP12.06□□□□□ -0.48
CCDC40-204ENST00000397545 TTF2Q9UNY4 1162 aaKnown RBP12.06□□□□□ -0.48
CCDC40-204ENST00000397545 SH3TC1Q8TE82 1336 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 TNS3Q68CZ2 1445 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 CCDC155Q8N6L0 562 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 ERMNQ8TAM6 284 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 MRFAP1L1Q96HT8 127 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 PUS3Q9BZE2 481 aaKnown RBP12.06□□□□□ -0.48
CCDC40-204ENST00000397545 TRIM31Q9BZY9 425 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 TAF6LQ9Y6J9 622 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 PUM3Q15397 648 aaKnown RBP12.06□□□□□ -0.48
CCDC40-204ENST00000397545 CYP26C1Q6V0L0 522 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 CLEC17AQ6ZS10 378 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 FBXO18Q8NFZ0 1043 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 JAKMIP2Q96AA8 810 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 ZNF274Q96GC6 653 aaPredicted RBP12.06□□□□□ -0.48
CCDC40-204ENST00000397545 PCDH11XQ9BZA7 1347 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 PCDH11YQ9BZA8 1340 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 NDUFAB1O14561 156 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 HGSO14964 777 aaPredicted RBP12.06□□□□□ -0.48
CCDC40-204ENST00000397545 GNA11P29992 359 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 COL9A3Q14050 684 aaPredicted RBP12.06□□□□□ -0.48
CCDC40-204ENST00000397545 AATFQ9NY61 560 aaKnown RBP eCLIP12.06□□□□□ -0.48
CCDC40-204ENST00000397545 HEG1Q9ULI3 1381 aa12.06□□□□□ -0.48
CCDC40-204ENST00000397545 GRIPAP1Q4V328 841 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 FAM47AQ5JRC9 791 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 TMTC1Q8IUR5 882 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 AFAP1L1Q8TED9 768 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 TBC1D5Q92609 795 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 CCDC114Q96M63 670 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 GPCPD1Q9NPB8 672 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 FAM207AQ9NSI2 230 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-204ENST00000397545 MAGEA1P43355 309 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 SND1Q7KZF4 910 aaKnown RBP eCLIP12.05□□□□□ -0.48
CCDC40-204ENST00000397545 TTC14Q96N46 770 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 INCENPQ9NQS7 918 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 TBC1D7Q9P0N9 293 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 SLIT3O75094 1523 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 A0A1W2PRG0 241 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 LDHBP07195 334 aaKnown RBP12.05□□□□□ -0.48
CCDC40-204ENST00000397545 TUBBP07437 444 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 CCDC174Q6PII3 467 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 STXBP4Q6ZWJ1 553 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 GPHNQ9NQX3 736 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-204ENST00000397545 PPP2R2CQ9Y2T4 447 aa12.05□□□□□ -0.48
CCDC40-204ENST00000397545 GSTO1P78417 241 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 C8orf74Q6P047 294 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 CCDC121Q6ZUS5 278 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 SV2BQ7L1I2 683 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 TDRD7Q8NHU6 1098 aaKnown RBP12.04□□□□□ -0.48
CCDC40-204ENST00000397545 UBLCP1Q8WVY7 318 aaPredicted RBP12.04□□□□□ -0.48
CCDC40-204ENST00000397545 HAUS7Q99871 368 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 QTRT2Q9H974 415 aaKnown RBP12.04□□□□□ -0.48
CCDC40-204ENST00000397545 NLRC4Q9NPP4 1024 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 RIMBP2O15034 1052 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 ADORA1P30542 326 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 CCDC91Q7Z6B0 441 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 NELFBQ8WX92 580 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 COPRSQ9NQ92 184 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 GJB4Q9NTQ9 266 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 SERPINA10Q9UK55 444 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 CACNA1FO60840 1977 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 WDR17Q8IZU2 1322 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 GOLGA6CA6NDK9 693 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 GOLGA6DP0CG33 693 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 CMA1P23946 247 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 NAA30Q147X3 362 aaPredicted RBP12.04□□□□□ -0.48
CCDC40-204ENST00000397545 PTPROQ16827 1216 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 PI16Q6UXB8 463 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 SDR42E1Q8WUS8 393 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms