RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 C17orf99Q6UX52 265 aa9.18□□□□□ -0.94
HMGB3P1-201ENST00000393368 C16orf86Q6ZW13 317 aa9.18□□□□□ -0.94
HMGB3P1-201ENST00000393368 AMOTL1Q8IY63 956 aa9.18□□□□□ -0.94
HMGB3P1-201ENST00000393368 PARK7Q99497 189 aaKnown RBP9.18□□□□□ -0.94
HMGB3P1-201ENST00000393368 FEZ1Q99689 392 aa9.18□□□□□ -0.94
HMGB3P1-201ENST00000393368 WDR18Q9BV38 432 aa9.18□□□□□ -0.94
HMGB3P1-201ENST00000393368 ZCCHC17Q9NP64 241 aaKnown RBP9.18□□□□□ -0.94
HMGB3P1-201ENST00000393368 CABP5Q9NP86 173 aa9.18□□□□□ -0.94
HMGB3P1-201ENST00000393368 EMILIN3Q9NT22 766 aa9.18□□□□□ -0.94
HMGB3P1-201ENST00000393368 SWAP70Q9UH65 585 aa9.18□□□□□ -0.94
HMGB3P1-201ENST00000393368 BAZ2AQ9UIF9 1905 aaKnown RBP9.18□□□□□ -0.94
HMGB3P1-201ENST00000393368 LOC285556D6RIA3 1793 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 A0A1W2PRG0 241 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 USP17L10C9JJH3 530 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 GNAT2P19087 354 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 SBK1Q52WX2 424 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 SH3D19Q5HYK7 790 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 TTC22Q5TAA0 569 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 OTOP1Q7RTM1 612 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 PROCA1Q8NCQ7 364 aaPredicted RBP9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 SMCR8Q8TEV9 937 aaPredicted RBP9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 ERO1AQ96HE7 468 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 TBC1D2Q9BYX2 928 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 NAPBQ9H115 298 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 ASCC2Q9H1I8 757 aaPredicted RBP9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 INCENPQ9NQS7 918 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 TMOD4Q9NZQ9 345 aa9.17□□□□□ -0.94
HMGB3P1-201ENST00000393368 ROBO3Q96MS0 1386 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 PTPRFP10586 1907 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 CCDC85CA6NKD9 419 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 BCRP11274 1271 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 SDSP20132 328 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 RASA1P20936 1047 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 LACTBP83111 547 aaPredicted RBP9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 ATP2B2Q01814 1243 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 ICA1Q05084 483 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 CTDSPL2Q05D32 466 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 PPARAQ07869 468 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 MCMDC2Q4G0Z9 681 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 KIAA1755Q5JYT7 1200 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 GIMAP6Q6P9H5 292 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 CWC27Q6UX04 472 aaKnown RBP9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 TMEM179Q6ZVK1 233 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 SIAH1Q8IUQ4 282 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 ANKRD13CQ8N6S4 541 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 NACAP1Q9BZK3 213 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 IL25Q9H293 177 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 EFCC1Q9HA90 598 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 HELLSQ9NRZ9 838 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 GINM1Q9NU53 330 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 HPS5Q9UPZ3 1129 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 TACC3Q9Y6A5 838 aa9.16□□□□□ -0.94
HMGB3P1-201ENST00000393368 CCDC171Q6TFL3 1326 aa9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 EEF2P13639 858 aaKnown RBP9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 VCAM1P19320 739 aa9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 FAM47AQ5JRC9 791 aa9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 USP17L2Q6R6M4 530 aa9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 SPICE1Q8N0Z3 855 aa9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 TRIM47Q96LD4 638 aa9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 P2RX7Q99572 595 aaKnown RBP9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 KIAA1683Q9H0B3 1180 aa9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 MKNK2Q9HBH9 465 aa9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 DIAPH3Q9NSV4 1193 aa9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 SLC45A1Q9Y2W3 748 aa9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 CENPFP49454 3210 aa9.15□□□□□ -0.94
HMGB3P1-201ENST00000393368 C19orf81C9J6K1 198 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 FMNL1O95466 1100 aaPredicted RBP9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 HSPD1P10809 573 aaKnown RBP9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 OSBPP22059 807 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 PSMC4P43686 418 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 HAND2P61296 217 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 IRX3P78415 501 aaPredicted RBP9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 PABPC4Q13310 644 aaKnown RBP eCLIP9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 FBXO46Q6PJ61 603 aaPredicted RBP9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 POTEEQ6S8J3 1075 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 CHMP4CQ96CF2 233 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 C12orf42Q96LP6 360 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 CCDC17Q96LX7 622 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 PAGR1Q9BTK6 254 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 RPAP3Q9H6T3 665 aaPredicted RBP9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 TXNRD2Q9NNW7 524 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 PNMA3Q9UL41 463 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 PTPN22Q9Y2R2 807 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 PTCH2Q9Y6C5 1203 aa9.14□□□□□ -0.95
HMGB3P1-201ENST00000393368 RAD21O60216 631 aa9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 MYCP01106 439 aaPredicted RBP9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 FGAP02671 866 aa9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 HOXA7P31268 230 aaPredicted RBP9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 USP14P54578 494 aa9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 SOX10P56693 466 aa9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 HERVK_113P62684 666 aa9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 KIF22Q14807 665 aa9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 CENPQQ7L2Z9 268 aaPredicted RBP9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 NKX2-3Q8TAU0 364 aa9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 NUP88Q99567 741 aaPredicted RBP9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 TANGO6Q9C0B7 1094 aa9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 ARHGEF10LQ9HCE6 1279 aa9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 GABRQQ9UN88 632 aa9.13□□□□□ -0.95
HMGB3P1-201ENST00000393368 BRCA2P51587 3418 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms