RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 SLC9C2Q5TAH2 1124 aa15.71■□□□□ 0.11
SDC1-202ENST00000381150 CTR9Q6PD62 1173 aa15.71■□□□□ 0.11
SDC1-202ENST00000381150 CEP112Q8N8E3 955 aa15.71■□□□□ 0.11
SDC1-202ENST00000381150 MARCH10Q8NA82 808 aaPredicted RBP15.71■□□□□ 0.11
SDC1-202ENST00000381150 CAGE1Q8TC20 777 aa15.71■□□□□ 0.11
SDC1-202ENST00000381150 BPIFA3Q9BQP9 254 aa15.71■□□□□ 0.11
SDC1-202ENST00000381150 H0YHG0 523 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 RNF40O75150 1001 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 KIF23Q02241 960 aaPredicted RBP15.7■□□□□ 0.1
SDC1-202ENST00000381150 RBL2Q08999 1139 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 METTL16Q86W50 562 aaKnown RBP15.7■□□□□ 0.1
SDC1-202ENST00000381150 NOA1Q8NC60 698 aaKnown RBP15.7■□□□□ 0.1
SDC1-202ENST00000381150 PPM1EQ8WY54 764 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 KIFC2Q96AC6 838 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 CDCA7Q9BWT1 371 aaPredicted RBP15.7■□□□□ 0.1
SDC1-202ENST00000381150 ACBD3Q9H3P7 528 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 CDC23Q9UJX2 597 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 DENND2AQ9ULE3 1009 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 DOCK2Q92608 1830 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 CCT5P48643 541 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 RAD9BQ6WBX8 426 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 GPIHBP1Q8IV16 184 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.7■□□□□ 0.1
SDC1-202ENST00000381150 CCDC87Q9NVE4 849 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 THRAP3Q9Y2W1 955 aaKnown RBP15.7■□□□□ 0.1
SDC1-202ENST00000381150 CAMTA2O94983 1202 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 CRKLP46109 303 aaKnown RBP15.7■□□□□ 0.1
SDC1-202ENST00000381150 KCNJ6P48051 423 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 ITPK1Q13572 414 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 TTF1Q15361 905 aaPredicted RBP15.7■□□□□ 0.1
SDC1-202ENST00000381150 HELBQ8NG08 1087 aaPredicted RBP15.7■□□□□ 0.1
SDC1-202ENST00000381150 LPIN2Q92539 896 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 SLF1Q9BQI6 1058 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 MROH5Q6ZUA9 1318 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 WDR19Q8NEZ3 1342 aa15.7■□□□□ 0.1
SDC1-202ENST00000381150 PRR29P0C7W0 189 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 PUM3Q15397 648 aaKnown RBP15.69■□□□□ 0.1
SDC1-202ENST00000381150 KRT40Q6A162 431 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 LRRC31Q6UY01 552 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 BRAPQ7Z569 592 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 SERTAD1Q9UHV2 236 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 LRRIQ3A6PVS8 624 aaPredicted RBP15.69■□□□□ 0.1
SDC1-202ENST00000381150 ZNF213O14771 459 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 SLC39A14Q15043 492 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 DDB1Q16531 1140 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 TMEM139Q8IV31 216 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 CMTR1Q8N1G2 835 aaKnown RBP15.69■□□□□ 0.1
SDC1-202ENST00000381150 NCOA7Q8NI08 942 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 NUP88Q99567 741 aaPredicted RBP15.69■□□□□ 0.1
SDC1-202ENST00000381150 CRACR2AQ9BSW2 395 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 C4AP0C0L4 1744 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 C4BP0C0L5 1744 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 SNAP23O00161 211 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 CDC25AP30304 524 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 CASP14P31944 242 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 MATR3P43243 847 aaKnown RBP eCLIP15.69■□□□□ 0.1
SDC1-202ENST00000381150 RRP12Q5JTH9 1297 aaKnown RBP15.69■□□□□ 0.1
SDC1-202ENST00000381150 AFAP1L1Q8TED9 768 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 ZNF532Q9HCE3 1301 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 WWC3Q9ULE0 1092 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 TFR2Q9UP52 801 aa15.69■□□□□ 0.1
SDC1-202ENST00000381150 PDE6AP16499 860 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 METAP2P50579 478 aaKnown RBP eCLIP15.68■□□□□ 0.1
SDC1-202ENST00000381150 GRIN1Q05586 938 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 CPLX2Q6PUV4 134 aaKnown RBP15.68■□□□□ 0.1
SDC1-202ENST00000381150 SLC26A6Q9BXS9 759 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 UBXN6Q9BZV1 441 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 SEC31BQ9NQW1 1179 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 LOC102724428A0A0B4J2F2 783 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 SRGAP2O75044 1071 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 BMP6P22004 513 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 ATP6V1AP38606 617 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 SIK1P57059 783 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 SAMM50Q9Y512 469 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 COL4A1P02462 1669 aa15.68■□□□□ 0.1
SDC1-202ENST00000381150 UQCRFS1P1P0C7P4 283 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 TBC1D10CQ8IV04 446 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 ACSBG1Q96GR2 724 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 STRBPQ96SI9 672 aaKnown RBP15.67■□□□□ 0.1
SDC1-202ENST00000381150 VPS16Q9H269 839 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 HDAC6Q9UBN7 1215 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 KCNJ14Q9UNX9 436 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 MAPK8IP1Q9UQF2 711 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.67■□□□□ 0.1
SDC1-202ENST00000381150 MAN1B1Q9UKM7 699 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 L1RE1Q9UN81 338 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 POSTNQ15063 836 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 FBXW10Q5XX13 1052 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 CCDC148Q8NFR7 591 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 EHD4Q9H223 541 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 CENPHQ9H3R5 247 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 TRIM10Q9UDY6 481 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 LAMB2P55268 1798 aa15.67■□□□□ 0.1
SDC1-202ENST00000381150 MAP2K7O14733 419 aa15.66■□□□□ 0.1
SDC1-202ENST00000381150 IDH1O75874 414 aaKnown RBP15.66■□□□□ 0.1
SDC1-202ENST00000381150 ADAMTS2O95450 1211 aa15.66■□□□□ 0.1
SDC1-202ENST00000381150 NTSR2O95665 410 aa15.66■□□□□ 0.1
SDC1-202ENST00000381150 EP400NLQ6ZTU2 488 aa15.66■□□□□ 0.1
SDC1-202ENST00000381150 CYB5R4Q7L1T6 521 aa15.66■□□□□ 0.1
SDC1-202ENST00000381150 FCHSD1Q86WN1 690 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms