RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 CGNQ9P2M7 1197 aaKnown RBP12.4□□□□□ -0.42
NEDD9-201ENST00000379433 PCDHAC2Q9Y5I4 1007 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 POLRMTO00411 1230 aaKnown RBP12.4□□□□□ -0.42
NEDD9-201ENST00000379433 PPEF1O14829 653 aaPredicted RBP12.4□□□□□ -0.42
NEDD9-201ENST00000379433 BAG3O95817 575 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 SLC3A2P08195 630 aaKnown RBP12.4□□□□□ -0.42
NEDD9-201ENST00000379433 AMOTL1Q8IY63 956 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 GRAMD1CQ8IYS0 662 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 STAG2Q8N3U4 1231 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 CRACR2BQ8N4Y2 399 aaPredicted RBP12.4□□□□□ -0.42
NEDD9-201ENST00000379433 WDR66Q8TBY9 1149 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 PPP1R9BQ96SB3 815 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 PCDHB6Q9Y5E3 794 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 DDX60Q8IY21 1712 aaKnown RBP12.4□□□□□ -0.42
NEDD9-201ENST00000379433 MYH2Q9UKX2 1941 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 MARCH6O60337 910 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 NPM3O75607 178 aaKnown RBP12.39□□□□□ -0.43
NEDD9-201ENST00000379433 TPM2P07951 284 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 EVCP57679 992 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 FAM160A1Q05DH4 1040 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 ZNF174Q15697 407 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 DPP8Q6V1X1 898 aaPredicted RBP12.39□□□□□ -0.43
NEDD9-201ENST00000379433 GET4Q7L5D6 327 aaPredicted RBP12.39□□□□□ -0.43
NEDD9-201ENST00000379433 SGMS1Q86VZ5 419 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 KAT14Q9H8E8 782 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 NRBP1Q9UHY1 535 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 PARP3Q9Y6F1 533 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 MYH13Q9UKX3 1938 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 MPHOSPH10O00566 681 aaKnown RBP12.39□□□□□ -0.43
NEDD9-201ENST00000379433 ZNF202O95125 648 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 PFKFB1P16118 471 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 FILIP1Q7Z7B0 1213 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 ZSCAN29Q8IWY8 852 aaPredicted RBP12.39□□□□□ -0.43
NEDD9-201ENST00000379433 FAM200AQ8TCP9 573 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.39□□□□□ -0.43
NEDD9-201ENST00000379433 SCAF8Q9UPN6 1271 aaKnown RBP12.39□□□□□ -0.43
NEDD9-201ENST00000379433 LEMD3Q9Y2U8 911 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 MYH7P12883 1935 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 CCDC196A0A1B0GTZ2 297 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 CDC25AP30304 524 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 SNW1Q13573 536 aaKnown RBP12.39□□□□□ -0.43
NEDD9-201ENST00000379433 EARS2Q5JPH6 523 aaKnown RBP12.39□□□□□ -0.43
NEDD9-201ENST00000379433 AOPEPQ8N6M6 819 aa12.39□□□□□ -0.43
NEDD9-201ENST00000379433 TTF2Q9UNY4 1162 aaKnown RBP12.39□□□□□ -0.43
NEDD9-201ENST00000379433 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.39□□□□□ -0.43
NEDD9-201ENST00000379433 FOXN1O15353 648 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 NLRP5P59047 1200 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 PNOCQ13519 176 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 CCDC125Q86Z20 511 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 RTEL1Q9NZ71 1219 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 MROH7-TTC4A0A0A0MT08 1334 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 GOLGA6CA6NDK9 693 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 GOLGA6BA6NDN3 693 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 FMNL1O95466 1100 aaPredicted RBP12.38□□□□□ -0.43
NEDD9-201ENST00000379433 GOLGA6DP0CG33 693 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 IFNAR1P17181 557 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 CASP1P29466 404 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 SYKP43405 635 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 USP49Q70CQ1 688 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 NOSTRINQ8IVI9 506 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 KCNG4Q8TDN1 519 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 CCDC97Q96F63 343 aaPredicted RBP12.38□□□□□ -0.43
NEDD9-201ENST00000379433 GOLGA6AQ9NYA3 693 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 WNK3Q9BYP7 1800 aa12.38□□□□□ -0.43
NEDD9-201ENST00000379433 ADAMTS3O15072 1205 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 BRAPQ7Z569 592 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 TDRD7Q8NHU6 1098 aaKnown RBP12.37□□□□□ -0.43
NEDD9-201ENST00000379433 RXRBP28702 533 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 MYBPC2Q14324 1141 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 DPCR1Q3MIW9 517 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 PIK3AP1Q6ZUJ8 805 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 HEATR3Q7Z4Q2 680 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 SRBD1Q8N5C6 995 aaKnown RBP12.37□□□□□ -0.43
NEDD9-201ENST00000379433 CALR3Q96L12 384 aaKnown RBP12.37□□□□□ -0.43
NEDD9-201ENST00000379433 PLIN2Q99541 437 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 FUCA2Q9BTY2 467 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 BRIP1Q9BX63 1249 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 R3HCC1Q9Y3T6 440 aaKnown RBP12.37□□□□□ -0.43
NEDD9-201ENST00000379433 ATRNO75882 1429 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 ONECUT3O60422 494 aaPredicted RBP12.37□□□□□ -0.43
NEDD9-201ENST00000379433 COBLO75128 1261 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 DEXIO95424 95 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 AFMP43652 599 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 SEC23AQ15436 765 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 EZH2Q15910 746 aaKnown RBP12.37□□□□□ -0.43
NEDD9-201ENST00000379433 ADALQ6DHV7 355 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 PNMA1Q8ND90 353 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 MAP7D2Q96T17 732 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 UBA5Q9GZZ9 404 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 CCDC39Q9UFE4 941 aa12.37□□□□□ -0.43
NEDD9-201ENST00000379433 MMP1P03956 469 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 MCM7P33993 719 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 RBM6P78332 1123 aaKnown RBP12.36□□□□□ -0.43
NEDD9-201ENST00000379433 SATB1Q01826 763 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 USP17L2Q6R6M4 530 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 DEFB132Q7Z7B7 95 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 ATP8A2Q9NTI2 1148 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 FRMPD2Q68DX3 1309 aaPredicted RBP12.36□□□□□ -0.43
NEDD9-201ENST00000379433 WNT7AO00755 349 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 PTGS1P23219 599 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms