RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 TAOK2Q9UL54 1235 aa15.92■□□□□ 0.14
VPS28-202ENST00000377348 MYH8P13535 1937 aa15.92■□□□□ 0.14
VPS28-202ENST00000377348 CASP8AP2Q9UKL3 1982 aa15.91■□□□□ 0.14
VPS28-202ENST00000377348 HAND2P61296 217 aa15.91■□□□□ 0.14
VPS28-202ENST00000377348 BMP2KLQ5H9B9 411 aa15.91■□□□□ 0.14
VPS28-202ENST00000377348 PROCA1Q8NCQ7 364 aaPredicted RBP15.91■□□□□ 0.14
VPS28-202ENST00000377348 FEZ1Q99689 392 aa15.91■□□□□ 0.14
VPS28-202ENST00000377348 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.91■□□□□ 0.14
VPS28-202ENST00000377348 ZFYVE28Q9HCC9 887 aa15.91■□□□□ 0.14
VPS28-202ENST00000377348 AGTPBP1Q9UPW5 1226 aa15.91■□□□□ 0.14
VPS28-202ENST00000377348 A0A1W2PRG0 241 aa15.9■□□□□ 0.14
VPS28-202ENST00000377348 ICA1Q05084 483 aa15.9■□□□□ 0.14
VPS28-202ENST00000377348 SIAH1Q8IUQ4 282 aa15.9■□□□□ 0.14
VPS28-202ENST00000377348 ZNF444Q8N0Y2 327 aaPredicted RBP15.9■□□□□ 0.14
VPS28-202ENST00000377348 ZCCHC17Q9NP64 241 aaKnown RBP15.9■□□□□ 0.14
VPS28-202ENST00000377348 EMILIN3Q9NT22 766 aa15.9■□□□□ 0.14
VPS28-202ENST00000377348 TMOD4Q9NZQ9 345 aa15.9■□□□□ 0.14
VPS28-202ENST00000377348 ZMYM6O95789 1325 aa15.9■□□□□ 0.14
VPS28-202ENST00000377348 LOC285556D6RIA3 1793 aa15.9■□□□□ 0.14
VPS28-202ENST00000377348 C19orf81C9J6K1 198 aa15.89■□□□□ 0.13
VPS28-202ENST00000377348 SLC3A2P08195 630 aaKnown RBP15.89■□□□□ 0.13
VPS28-202ENST00000377348 ATP2B2Q01814 1243 aa15.89■□□□□ 0.13
VPS28-202ENST00000377348 PDE4BQ07343 736 aa15.89■□□□□ 0.13
VPS28-202ENST00000377348 FAM47AQ5JRC9 791 aa15.89■□□□□ 0.13
VPS28-202ENST00000377348 USP17L2Q6R6M4 530 aa15.89■□□□□ 0.13
VPS28-202ENST00000377348 RUFY2Q8WXA3 655 aa15.89■□□□□ 0.13
VPS28-202ENST00000377348 NBPF3Q9H094 633 aa15.89■□□□□ 0.13
VPS28-202ENST00000377348 CPA4Q9UI42 421 aa15.89■□□□□ 0.13
VPS28-202ENST00000377348 ANAPC4Q9UJX5 808 aa15.89■□□□□ 0.13
VPS28-202ENST00000377348 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.89■□□□□ 0.131e-7■■■■□ 24.2
VPS28-202ENST00000377348 RAD50Q92878 1312 aa15.89■□□□□ 0.13
VPS28-202ENST00000377348 SGSM2O43147 1006 aa15.88■□□□□ 0.13
VPS28-202ENST00000377348 TLR2O60603 784 aa15.88■□□□□ 0.13
VPS28-202ENST00000377348 FKTNO75072 461 aa15.88■□□□□ 0.13
VPS28-202ENST00000377348 TBC1D10CQ8IV04 446 aa15.88■□□□□ 0.13
VPS28-202ENST00000377348 PARK7Q99497 189 aaKnown RBP15.88■□□□□ 0.13
VPS28-202ENST00000377348 DSCC1Q9BVC3 393 aa15.88■□□□□ 0.13
VPS28-202ENST00000377348 KIAA1683Q9H0B3 1180 aa15.88■□□□□ 0.13
VPS28-202ENST00000377348 ZNF287Q9HBT7 754 aa15.88■□□□□ 0.13
VPS28-202ENST00000377348 ADGRA2Q96PE1 1338 aa15.88■□□□□ 0.13
VPS28-202ENST00000377348 ECM2O94769 699 aaPredicted RBP15.87■□□□□ 0.13
VPS28-202ENST00000377348 EEF2P13639 858 aaKnown RBP15.87■□□□□ 0.13
VPS28-202ENST00000377348 USP14P54578 494 aa15.87■□□□□ 0.13
VPS28-202ENST00000377348 CAP1Q01518 475 aa15.87■□□□□ 0.13
VPS28-202ENST00000377348 TFAP4Q01664 338 aa15.87■□□□□ 0.13
VPS28-202ENST00000377348 PTH1RQ03431 593 aa15.87■□□□□ 0.13
VPS28-202ENST00000377348 NOM1Q5C9Z4 860 aaKnown RBP15.87■□□□□ 0.13
VPS28-202ENST00000377348 KIAA1755Q5JYT7 1200 aa15.87■□□□□ 0.13
VPS28-202ENST00000377348 ASCC2Q9H1I8 757 aaPredicted RBP15.87■□□□□ 0.13
VPS28-202ENST00000377348 KANSL2Q9H9L4 492 aa15.87■□□□□ 0.13
VPS28-202ENST00000377348 TOMM22Q9NS69 142 aa15.87■□□□□ 0.13
VPS28-202ENST00000377348 SLC45A1Q9Y2W3 748 aa15.87■□□□□ 0.13
VPS28-202ENST00000377348 GREB1LQ9C091 1923 aaPredicted RBP15.86■□□□□ 0.13
VPS28-202ENST00000377348 IGKV6D-41A0A0C4DH26 115 aa15.86■□□□□ 0.13
VPS28-202ENST00000377348 TSPY3P0CV98 308 aa15.86■□□□□ 0.13
VPS28-202ENST00000377348 TSPY8P0CW00 308 aa15.86■□□□□ 0.13
VPS28-202ENST00000377348 VCAM1P19320 739 aa15.86■□□□□ 0.13
VPS28-202ENST00000377348 SP3Q02447 781 aa15.86■□□□□ 0.13
VPS28-202ENST00000377348 RRP12Q5JTH9 1297 aaKnown RBP15.86■□□□□ 0.13
VPS28-202ENST00000377348 C17orf99Q6UX52 265 aa15.86■□□□□ 0.13
VPS28-202ENST00000377348 NKX2-3Q8TAU0 364 aa15.86■□□□□ 0.13
VPS28-202ENST00000377348 CD99L2Q8TCZ2 262 aa15.86■□□□□ 0.13
VPS28-202ENST00000377348 C12orf42Q96LP6 360 aa15.86■□□□□ 0.13
VPS28-202ENST00000377348 ARHGEF10LQ9HCE6 1279 aa15.86■□□□□ 0.13
VPS28-202ENST00000377348 TMX2Q9Y320 296 aa15.86■□□□□ 0.13
VPS28-202ENST00000377348 ZNF213O14771 459 aa15.85■□□□□ 0.13
VPS28-202ENST00000377348 RANBP6O60518 1105 aaKnown RBP15.85■□□□□ 0.13
VPS28-202ENST00000377348 FGRP09769 529 aa15.85■□□□□ 0.13
VPS28-202ENST00000377348 OSBPP22059 807 aa15.85■□□□□ 0.13
VPS28-202ENST00000377348 PABPC4Q13310 644 aaKnown RBP eCLIP15.85■□□□□ 0.131e-7■■■□□ 18.8
VPS28-202ENST00000377348 SPICE1Q8N0Z3 855 aa15.85■□□□□ 0.13
VPS28-202ENST00000377348 NEDD1Q8NHV4 660 aa15.85■□□□□ 0.13
VPS28-202ENST00000377348 SMCR8Q8TEV9 937 aaPredicted RBP15.85■□□□□ 0.13
VPS28-202ENST00000377348 CEP95Q96GE4 821 aa15.85■□□□□ 0.13
VPS28-202ENST00000377348 ESYT1Q9BSJ8 1104 aa15.85■□□□□ 0.13
VPS28-202ENST00000377348 TSPY2A6NKD2 308 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 ORC4O43929 436 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 NMT2O60551 498 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 BCRP11274 1271 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 HOXA7P31268 230 aaPredicted RBP15.84■□□□□ 0.13
VPS28-202ENST00000377348 IRX3P78415 501 aaPredicted RBP15.84■□□□□ 0.13
VPS28-202ENST00000377348 AKNAD1Q5T1N1 836 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 STAG1Q8WVM7 1258 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 P2RX7Q99572 595 aaKnown RBP15.84■□□□□ 0.13
VPS28-202ENST00000377348 ARHGAP39Q9C0H5 1083 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 RPAP3Q9H6T3 665 aaPredicted RBP15.84■□□□□ 0.13
VPS28-202ENST00000377348 VCPKMTQ9H867 229 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 MTMR4Q9NYA4 1195 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 CLIP2Q9UDT6 1046 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 PNMA3Q9UL41 463 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 NEDD4P46934 1319 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 PLIN4Q96Q06 1357 aa15.84■□□□□ 0.13
VPS28-202ENST00000377348 RAD21O60216 631 aa15.83■□□□□ 0.12
VPS28-202ENST00000377348 PEX10O60683 326 aa15.83■□□□□ 0.12
VPS28-202ENST00000377348 IMMTQ16891 758 aaKnown RBP15.83■□□□□ 0.12
VPS28-202ENST00000377348 MFSD6Q6ZSS7 791 aa15.83■□□□□ 0.12
VPS28-202ENST00000377348 TNS4Q8IZW8 715 aa15.83■□□□□ 0.12
VPS28-202ENST00000377348 SH2D4AQ9H788 454 aa15.83■□□□□ 0.12
VPS28-202ENST00000377348 IL17RBQ9NRM6 502 aa15.83■□□□□ 0.12
VPS28-202ENST00000377348 NYAP2Q9P242 653 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms