RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 ZNF804BA4D1E1 1349 aa28.87■■■□□ 2.21
C9orf40-201ENST00000376854 STX10O60499 249 aa28.87■■■□□ 2.21
C9orf40-201ENST00000376854 URI1O94763 535 aaPredicted RBP28.87■■■□□ 2.21
C9orf40-201ENST00000376854 ERCC5P28715 1186 aaPredicted RBP28.87■■■□□ 2.21
C9orf40-201ENST00000376854 ADKP55263 362 aaKnown RBP28.87■■■□□ 2.21
C9orf40-201ENST00000376854 PHF20Q9BVI0 1012 aa28.87■■■□□ 2.21
C9orf40-201ENST00000376854 GNL3LQ9NVN8 582 aaKnown RBP28.87■■■□□ 2.21
C9orf40-201ENST00000376854 ZNF446Q9NWS9 450 aa28.87■■■□□ 2.21
C9orf40-201ENST00000376854 FAM53CQ9NYF3 392 aa28.87■■■□□ 2.21
C9orf40-201ENST00000376854 IGSF3O75054 1194 aa28.86■■■□□ 2.21
C9orf40-201ENST00000376854 ARHGAP29Q52LW3 1261 aa28.86■■■□□ 2.21
C9orf40-201ENST00000376854 CCDC34Q96HJ3 373 aa28.86■■■□□ 2.21
C9orf40-201ENST00000376854 CDC5LQ99459 802 aaKnown RBP28.86■■■□□ 2.21
C9orf40-201ENST00000376854 RIOK1Q9BRS2 568 aaKnown RBP28.86■■■□□ 2.21
C9orf40-201ENST00000376854 hCG_1642624A0A1W2PR95 340 aa28.86■■■□□ 2.21
C9orf40-201ENST00000376854 FUT2Q10981 343 aa28.86■■■□□ 2.21
C9orf40-201ENST00000376854 ERFEQ4G0M1 354 aa28.86■■■□□ 2.21
C9orf40-201ENST00000376854 EARS2Q5JPH6 523 aaKnown RBP28.86■■■□□ 2.21
C9orf40-201ENST00000376854 IFIT1BQ5T764 474 aaKnown RBP28.86■■■□□ 2.21
C9orf40-201ENST00000376854 CATIPQ7Z7H3 387 aa28.86■■■□□ 2.21
C9orf40-201ENST00000376854 SRRTQ9BXP5 876 aaKnown RBP28.86■■■□□ 2.21
C9orf40-201ENST00000376854 PRPF3O43395 683 aaKnown RBP28.85■■■□□ 2.21
C9orf40-201ENST00000376854 PRDM1O75626 825 aa28.85■■■□□ 2.21
C9orf40-201ENST00000376854 EPSTI1Q96J88 318 aa28.85■■■□□ 2.21
C9orf40-201ENST00000376854 A0A087X0B3 334 aa28.85■■■□□ 2.21
C9orf40-201ENST00000376854 FAM177A1Q8N128 213 aaPredicted RBP28.85■■■□□ 2.21
C9orf40-201ENST00000376854 MNS1Q8NEH6 495 aa28.85■■■□□ 2.21
C9orf40-201ENST00000376854 V9GY48 417 aaPredicted RBP28.85■■■□□ 2.21
C9orf40-201ENST00000376854 CYP2D7A0A087X1C5 515 aa28.84■■■□□ 2.21
C9orf40-201ENST00000376854 GOLGA6L9A6NEM1 432 aa28.84■■■□□ 2.21
C9orf40-201ENST00000376854 PLEKHA8P1O95397 391 aa28.84■■■□□ 2.21
C9orf40-201ENST00000376854 PARP3Q9Y6F1 533 aa28.84■■■□□ 2.21
C9orf40-201ENST00000376854 DYNLL1P63167 89 aaKnown RBP28.83■■■□□ 2.21
C9orf40-201ENST00000376854 NR1I3Q14994 352 aa28.83■■■□□ 2.21
C9orf40-201ENST00000376854 LINC00116Q8NCU8 138 aa28.83■■■□□ 2.21
C9orf40-201ENST00000376854 UBXN4Q92575 508 aa28.83■■■□□ 2.21
C9orf40-201ENST00000376854 AFMP43652 599 aa28.83■■■□□ 2.21
C9orf40-201ENST00000376854 TOGARAM2Q6ZUX3 1019 aa28.83■■■□□ 2.21
C9orf40-201ENST00000376854 RBM28Q9NW13 759 aaKnown RBP28.83■■■□□ 2.21
C9orf40-201ENST00000376854 KIF20AO95235 890 aa28.82■■■□□ 2.2
C9orf40-201ENST00000376854 SLFN14P0C7P3 912 aa28.82■■■□□ 2.2
C9orf40-201ENST00000376854 SYMPKQ92797 1274 aaKnown RBP28.82■■■□□ 2.2
C9orf40-201ENST00000376854 LAMB2P55268 1798 aa28.82■■■□□ 2.2
C9orf40-201ENST00000376854 TAF1P21675 1872 aa28.82■■■□□ 2.2
C9orf40-201ENST00000376854 A0A1B0GTH6 734 aa28.82■■■□□ 2.2
C9orf40-201ENST00000376854 CLCN6P51797 869 aa28.82■■■□□ 2.2
C9orf40-201ENST00000376854 IQCA1Q86XH1 822 aa28.82■■■□□ 2.2
C9orf40-201ENST00000376854 PAGE5Q96GU1 130 aa28.82■■■□□ 2.2
C9orf40-201ENST00000376854 BRIP1Q9BX63 1249 aa28.82■■■□□ 2.2
C9orf40-201ENST00000376854 COL1A1P02452 1464 aaPredicted RBP28.82■■■□□ 2.2
C9orf40-201ENST00000376854 ANKRD18AQ8IVF6 992 aa28.81■■■□□ 2.2
C9orf40-201ENST00000376854 FERMT2Q96AC1 680 aa28.81■■■□□ 2.2
C9orf40-201ENST00000376854 BRMS1Q9HCU9 246 aa28.81■■■□□ 2.2
C9orf40-201ENST00000376854 BMP15O95972 392 aa28.81■■■□□ 2.2
C9orf40-201ENST00000376854 CT47A1Q5JQC4 288 aaPredicted RBP28.81■■■□□ 2.2
C9orf40-201ENST00000376854 BICDL1Q6ZP65 573 aa28.81■■■□□ 2.2
C9orf40-201ENST00000376854 SH3RF1Q7Z6J0 888 aa28.81■■■□□ 2.2
C9orf40-201ENST00000376854 CICQ96RK0 1608 aaPredicted RBP28.81■■■□□ 2.2
C9orf40-201ENST00000376854 CARD6Q9BX69 1037 aa28.81■■■□□ 2.2
C9orf40-201ENST00000376854 CASQ1P31415 396 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 GNG11P61952 73 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 UBE4AQ14139 1066 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 KLHL10Q6JEL2 608 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 ZNF652Q9Y2D9 606 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 DUOX1Q9NRD9 1551 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 WNT7AO00755 349 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 TADA3O75528 432 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 CALM1P0DP23 149 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 CALM2P0DP24 149 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 CALM3P0DP25 149 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 TROAPQ12815 778 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 BMS1Q14692 1282 aaKnown RBP28.8■■■□□ 2.2
C9orf40-201ENST00000376854 CAVIN4Q5BKX8 364 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 SPATA1Q5VX52 437 aa28.8■■■□□ 2.2
C9orf40-201ENST00000376854 WDR24Q96S15 920 aa28.79■■■□□ 2.2
C9orf40-201ENST00000376854 CD44P16070 742 aaKnown RBP28.78■■■□□ 2.2
C9orf40-201ENST00000376854 CASP1P29466 404 aa28.78■■■□□ 2.2
C9orf40-201ENST00000376854 ZNF174Q15697 407 aa28.78■■■□□ 2.2
C9orf40-201ENST00000376854 BARGINQ6ZT62 677 aa28.78■■■□□ 2.2
C9orf40-201ENST00000376854 SYNRGQ9UMZ2 1314 aa28.78■■■□□ 2.2
C9orf40-201ENST00000376854 EFCAB8A8MWE9 144 aa28.78■■■□□ 2.2
C9orf40-201ENST00000376854 PTF1AQ7RTS3 328 aa28.78■■■□□ 2.2
C9orf40-201ENST00000376854 SMARCC1Q92922 1105 aaPredicted RBP28.78■■■□□ 2.2
C9orf40-201ENST00000376854 AKR1B15C9JRZ8 316 aaPredicted RBP28.77■■■□□ 2.2
C9orf40-201ENST00000376854 PCP11498 1178 aaKnown RBP28.77■■■□□ 2.2
C9orf40-201ENST00000376854 STX17P56962 302 aa28.77■■■□□ 2.2
C9orf40-201ENST00000376854 CUL4BQ13620 913 aa28.77■■■□□ 2.2
C9orf40-201ENST00000376854 CTR9Q6PD62 1173 aa28.77■■■□□ 2.2
C9orf40-201ENST00000376854 TMTC3Q6ZXV5 915 aa28.77■■■□□ 2.2
C9orf40-201ENST00000376854 MYH6P13533 1939 aa28.77■■■□□ 2.2
C9orf40-201ENST00000376854 DDAH1O94760 285 aa28.77■■■□□ 2.2
C9orf40-201ENST00000376854 FGRP09769 529 aa28.77■■■□□ 2.2
C9orf40-201ENST00000376854 DPYDQ12882 1025 aa28.77■■■□□ 2.2
C9orf40-201ENST00000376854 FAM98CQ17RN3 349 aaKnown RBP28.77■■■□□ 2.2
C9orf40-201ENST00000376854 NOM1Q5C9Z4 860 aaKnown RBP28.77■■■□□ 2.2
C9orf40-201ENST00000376854 ZNF771Q7L3S4 317 aaPredicted RBP28.77■■■□□ 2.2
C9orf40-201ENST00000376854 APTXQ7Z2E3 356 aaKnown RBP28.77■■■□□ 2.2
C9orf40-201ENST00000376854 TNFRSF25Q93038 417 aa28.77■■■□□ 2.2
C9orf40-201ENST00000376854 GSDMAQ96QA5 445 aa28.77■■■□□ 2.2
C9orf40-201ENST00000376854 ARGLU1Q9NWB6 273 aaPredicted RBP28.77■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms