RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 SERPINB13Q9UIV8 391 aa17.22■□□□□ 0.35
PTCH1-202ENST00000375271 CDK5RAP2Q96SN8 1893 aa17.21■□□□□ 0.35
PTCH1-202ENST00000375271 CYP2E1P05181 493 aaPredicted RBP17.21■□□□□ 0.35
PTCH1-202ENST00000375271 LRRC26Q2I0M4 334 aa17.21■□□□□ 0.35
PTCH1-202ENST00000375271 ABCB5Q2M3G0 1257 aa17.21■□□□□ 0.35
PTCH1-202ENST00000375271 CERKLQ49MI3 558 aaPredicted RBP17.21■□□□□ 0.35
PTCH1-202ENST00000375271 MORN1Q5T089 497 aa17.21■□□□□ 0.35
PTCH1-202ENST00000375271 EMILIN3Q9NT22 766 aa17.21■□□□□ 0.35
PTCH1-202ENST00000375271 MTMR10Q9NXD2 777 aa17.21■□□□□ 0.35
PTCH1-202ENST00000375271 NDUFB9Q9Y6M9 179 aa17.21■□□□□ 0.35
PTCH1-202ENST00000375271 MYH1P12882 1939 aa17.2■□□□□ 0.34
PTCH1-202ENST00000375271 SLC15A5A6NIM6 579 aa17.2■□□□□ 0.34
PTCH1-202ENST00000375271 MYCNP04198 464 aaPredicted RBP17.2■□□□□ 0.34
PTCH1-202ENST00000375271 COL6A1P12109 1028 aa17.2■□□□□ 0.34
PTCH1-202ENST00000375271 DYNLL1P63167 89 aaKnown RBP17.2■□□□□ 0.34
PTCH1-202ENST00000375271 MAP3K12Q12852 859 aa17.2■□□□□ 0.34
PTCH1-202ENST00000375271 SHROOM1Q2M3G4 852 aaPredicted RBP17.2■□□□□ 0.34
PTCH1-202ENST00000375271 ADGRA1Q86SQ6 560 aa17.2■□□□□ 0.34
PTCH1-202ENST00000375271 METTL16Q86W50 562 aaKnown RBP17.2■□□□□ 0.34
PTCH1-202ENST00000375271 FTSJ3Q8IY81 847 aaKnown RBP17.2■□□□□ 0.34
PTCH1-202ENST00000375271 MIGA1Q8NAN2 632 aa17.2■□□□□ 0.34
PTCH1-202ENST00000375271 DDX20Q9UHI6 824 aaKnown RBP17.2■□□□□ 0.34
PTCH1-202ENST00000375271 KBTBD13C9JR72 458 aa17.19■□□□□ 0.34
PTCH1-202ENST00000375271 ATN1P54259 1190 aaPredicted RBP17.19■□□□□ 0.34
PTCH1-202ENST00000375271 JAG1P78504 1218 aa17.19■□□□□ 0.34
PTCH1-202ENST00000375271 DPP9Q86TI2 863 aa17.19■□□□□ 0.34
PTCH1-202ENST00000375271 MAGEB6Q8N7X4 407 aa17.19■□□□□ 0.34
PTCH1-202ENST00000375271 USP6NLQ92738 828 aa17.19■□□□□ 0.34
PTCH1-202ENST00000375271 C12orf42Q96LP6 360 aa17.19■□□□□ 0.34
PTCH1-202ENST00000375271 SLC5A4Q9NY91 659 aa17.19■□□□□ 0.34
PTCH1-202ENST00000375271 MPHOSPH10O00566 681 aaKnown RBP17.18■□□□□ 0.34
PTCH1-202ENST00000375271 POLR3DP05423 398 aaPredicted RBP17.18■□□□□ 0.34
PTCH1-202ENST00000375271 VCAM1P19320 739 aa17.18■□□□□ 0.34
PTCH1-202ENST00000375271 PTPREP23469 700 aa17.18■□□□□ 0.34
PTCH1-202ENST00000375271 ZNF697Q5TEC3 545 aa17.18■□□□□ 0.34
PTCH1-202ENST00000375271 ZKSCAN2Q63HK3 967 aa17.18■□□□□ 0.34
PTCH1-202ENST00000375271 LHX8Q68G74 356 aa17.18■□□□□ 0.34
PTCH1-202ENST00000375271 LPAR1Q92633 364 aa17.18■□□□□ 0.34
PTCH1-202ENST00000375271 ZNF512BQ96KM6 892 aaPredicted RBP17.18■□□□□ 0.34
PTCH1-202ENST00000375271 KIAA1683Q9H0B3 1180 aa17.18■□□□□ 0.34
PTCH1-202ENST00000375271 PIH1D3Q9NQM4 214 aaKnown RBP17.18■□□□□ 0.34
PTCH1-202ENST00000375271 A0A0C4DFX4 3053 aa17.17■□□□□ 0.34
PTCH1-202ENST00000375271 DNM1LO00429 736 aa17.17■□□□□ 0.34
PTCH1-202ENST00000375271 TMED8Q6PL24 325 aaPredicted RBP17.17■□□□□ 0.34
PTCH1-202ENST00000375271 CATSPERGQ6ZRH7 1159 aa17.17■□□□□ 0.34
PTCH1-202ENST00000375271 ARRDC4Q8NCT1 418 aa17.17■□□□□ 0.34
PTCH1-202ENST00000375271 TANGO6Q9C0B7 1094 aa17.17■□□□□ 0.34
PTCH1-202ENST00000375271 EHD4Q9H223 541 aa17.17■□□□□ 0.34
PTCH1-202ENST00000375271 RPAP3Q9H6T3 665 aaPredicted RBP17.17■□□□□ 0.34
PTCH1-202ENST00000375271 PRDM5Q9NQX1 630 aaPredicted RBP17.17■□□□□ 0.34
PTCH1-202ENST00000375271 ATP11BQ9Y2G3 1177 aa17.17■□□□□ 0.34
PTCH1-202ENST00000375271 FRMPD3Q5JV73 1810 aa17.17■□□□□ 0.34
PTCH1-202ENST00000375271 TATDN1Q6P1N9 297 aa17.16■□□□□ 0.34
PTCH1-202ENST00000375271 TMEM57Q8N5G2 664 aa17.16■□□□□ 0.34
PTCH1-202ENST00000375271 FAM161BQ96MY7 647 aa17.16■□□□□ 0.34
PTCH1-202ENST00000375271 CCDC8Q9H0W5 538 aaPredicted RBP17.16■□□□□ 0.34
PTCH1-202ENST00000375271 BCAR3O75815 825 aa17.15■□□□□ 0.34
PTCH1-202ENST00000375271 RTP1P59025 263 aa17.15■□□□□ 0.34
PTCH1-202ENST00000375271 ATP8B2P98198 1209 aa17.15■□□□□ 0.34
PTCH1-202ENST00000375271 POLA2Q14181 598 aa17.15■□□□□ 0.34
PTCH1-202ENST00000375271 GRB14Q14449 540 aa17.15■□□□□ 0.34
PTCH1-202ENST00000375271 ITPRIPQ8IWB1 547 aa17.15■□□□□ 0.34
PTCH1-202ENST00000375271 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.15■□□□□ 0.34
PTCH1-202ENST00000375271 SSH3Q8TE77 659 aa17.15■□□□□ 0.34
PTCH1-202ENST00000375271 HOXC10Q9NYD6 342 aa17.15■□□□□ 0.34
PTCH1-202ENST00000375271 DBNLQ9UJU6 430 aaKnown RBP17.15■□□□□ 0.34
PTCH1-202ENST00000375271 MYO5AQ9Y4I1 1855 aaKnown RBP17.15■□□□□ 0.34
PTCH1-202ENST00000375271 CYP2C19P33261 490 aa17.14■□□□□ 0.33
PTCH1-202ENST00000375271 PLS1Q14651 629 aa17.14■□□□□ 0.33
PTCH1-202ENST00000375271 FAM109BQ6ICB4 259 aaPredicted RBP17.14■□□□□ 0.33
PTCH1-202ENST00000375271 SAMD1Q6SPF0 538 aaPredicted RBP17.14■□□□□ 0.33
PTCH1-202ENST00000375271 LBX2Q6XYB7 198 aa17.14■□□□□ 0.33
PTCH1-202ENST00000375271 ERC1Q8IUD2 1116 aa17.14■□□□□ 0.33
PTCH1-202ENST00000375271 ACER1Q8TDN7 264 aa17.14■□□□□ 0.33
PTCH1-202ENST00000375271 CRNKL1Q9BZJ0 848 aaKnown RBP17.14■□□□□ 0.33
PTCH1-202ENST00000375271 C1orf115Q9H7X2 142 aa17.14■□□□□ 0.33
PTCH1-202ENST00000375271 MAGEB6P1A0A0J9YX57 407 aa17.13■□□□□ 0.33
PTCH1-202ENST00000375271 SPDYE16A6NNV3 312 aaPredicted RBP17.13■□□□□ 0.33
PTCH1-202ENST00000375271 STRNO43815 780 aa17.13■□□□□ 0.33
PTCH1-202ENST00000375271 CNMDO75829 334 aa17.13■□□□□ 0.33
PTCH1-202ENST00000375271 HOXC6P09630 235 aa17.13■□□□□ 0.33
PTCH1-202ENST00000375271 TTF1Q15361 905 aaPredicted RBP17.13■□□□□ 0.33
PTCH1-202ENST00000375271 GJC2Q5T442 439 aaPredicted RBP17.13■□□□□ 0.33
PTCH1-202ENST00000375271 SH2D4AQ9H788 454 aa17.13■□□□□ 0.33
PTCH1-202ENST00000375271 TLR7Q9NYK1 1049 aaKnown RBP17.13■□□□□ 0.33
PTCH1-202ENST00000375271 FLRT1Q9NZU1 646 aa17.13■□□□□ 0.33
PTCH1-202ENST00000375271 TNNQ9UQP3 1299 aa17.13■□□□□ 0.33
PTCH1-202ENST00000375271 ADORA2AP29274 412 aa17.12■□□□□ 0.33
PTCH1-202ENST00000375271 COG2Q14746 738 aa17.12■□□□□ 0.33
PTCH1-202ENST00000375271 AACSQ86V21 672 aa17.12■□□□□ 0.33
PTCH1-202ENST00000375271 AMOTL1Q8IY63 956 aa17.12■□□□□ 0.33
PTCH1-202ENST00000375271 NPLOC4Q8TAT6 608 aa17.12■□□□□ 0.33
PTCH1-202ENST00000375271 MCM9Q9NXL9 1143 aa17.12■□□□□ 0.33
PTCH1-202ENST00000375271 BTBD7Q9P203 1132 aa17.12■□□□□ 0.33
PTCH1-202ENST00000375271 NAV1Q8NEY1 1877 aa17.12■□□□□ 0.33
PTCH1-202ENST00000375271 SEPT2Q15019 361 aa17.11■□□□□ 0.33
PTCH1-202ENST00000375271 OLFML2BQ68BL8 750 aa17.11■□□□□ 0.33
PTCH1-202ENST00000375271 NCAPG2Q86XI2 1143 aa17.11■□□□□ 0.33
PTCH1-202ENST00000375271 MB21D1Q8N884 522 aa17.11■□□□□ 0.33
PTCH1-202ENST00000375271 ARHGEF10LQ9HCE6 1279 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms