RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TMEM39BQ9GZU3 492 aa18.02■□□□□ 0.48
CCDC40-202ENST00000374876 NBPF3Q9H094 633 aa18.02■□□□□ 0.48
CCDC40-202ENST00000374876 HPS5Q9UPZ3 1129 aa18.02■□□□□ 0.48
CCDC40-202ENST00000374876 BAG3O95817 575 aa18.01■□□□□ 0.47
CCDC40-202ENST00000374876 HTRA3P83110 453 aa18.01■□□□□ 0.47
CCDC40-202ENST00000374876 PICALMQ13492 652 aa18.01■□□□□ 0.47
CCDC40-202ENST00000374876 ZFPM1Q8IX07 1006 aa18.01■□□□□ 0.47
CCDC40-202ENST00000374876 C8orf76Q96K31 380 aa18.01■□□□□ 0.47
CCDC40-202ENST00000374876 FTOQ9C0B1 505 aaKnown RBP eCLIP18.01■□□□□ 0.47
CCDC40-202ENST00000374876 CNTNAP1P78357 1384 aa18.01■□□□□ 0.47
CCDC40-202ENST00000374876 IGSF3O75054 1194 aa18.01■□□□□ 0.47
CCDC40-202ENST00000374876 TNFAIP1Q13829 316 aa18.01■□□□□ 0.47
CCDC40-202ENST00000374876 TBC1D10CQ8IV04 446 aa18.01■□□□□ 0.47
CCDC40-202ENST00000374876 STRBPQ96SI9 672 aaKnown RBP18.01■□□□□ 0.47
CCDC40-202ENST00000374876 DDX4Q9NQI0 724 aaKnown RBP18.01■□□□□ 0.47
CCDC40-202ENST00000374876 ORC3Q9UBD5 711 aaPredicted RBP18.01■□□□□ 0.47
CCDC40-202ENST00000374876 FAM198AQ9UFP1 575 aa18.01■□□□□ 0.47
CCDC40-202ENST00000374876 ANGEL1Q9UNK9 670 aaKnown RBP18.01■□□□□ 0.47
CCDC40-202ENST00000374876 MAST2Q6P0Q8 1798 aa18■□□□□ 0.47
CCDC40-202ENST00000374876 WDHD1O75717 1129 aaPredicted RBP18■□□□□ 0.47
CCDC40-202ENST00000374876 APLP1P51693 650 aa18■□□□□ 0.47
CCDC40-202ENST00000374876 PPP4CP60510 307 aa18■□□□□ 0.47
CCDC40-202ENST00000374876 ANO6Q4KMQ2 910 aa18■□□□□ 0.47
CCDC40-202ENST00000374876 NBPF12Q5TAG4 269 aaPredicted RBP18■□□□□ 0.47
CCDC40-202ENST00000374876 RAB11FIP4Q86YS3 637 aa18■□□□□ 0.47
CCDC40-202ENST00000374876 CCAR1Q8IX12 1150 aaKnown RBP18■□□□□ 0.47
CCDC40-202ENST00000374876 FZD1Q9UP38 647 aa18■□□□□ 0.47
CCDC40-202ENST00000374876 TNNI2P48788 182 aa17.99■□□□□ 0.47
CCDC40-202ENST00000374876 PRKG1Q13976 671 aa17.99■□□□□ 0.47
CCDC40-202ENST00000374876 CCDC73Q6ZRK6 1079 aa17.99■□□□□ 0.47
CCDC40-202ENST00000374876 TEX11Q8IYF3 940 aa17.99■□□□□ 0.47
CCDC40-202ENST00000374876 MYH15Q9Y2K3 1946 aa17.99■□□□□ 0.47
CCDC40-202ENST00000374876 MAGEB6P1A0A0J9YX57 407 aa17.99■□□□□ 0.47
CCDC40-202ENST00000374876 ME1P48163 572 aa17.99■□□□□ 0.47
CCDC40-202ENST00000374876 TEPSINQ96N21 525 aa17.99■□□□□ 0.47
CCDC40-202ENST00000374876 RIOK1Q9BRS2 568 aaKnown RBP17.99■□□□□ 0.47
CCDC40-202ENST00000374876 IDI2Q9BXS1 227 aa17.99■□□□□ 0.47
CCDC40-202ENST00000374876 HSPA6P17066 643 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 FKBP1CQ5VVH2 108 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 CYB5R4Q7L1T6 521 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 LUZP1Q86V48 1076 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 FBXO18Q8NFZ0 1043 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 TGFBRAP1Q8WUH2 860 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 TMEM88BA6NKF7 163 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 PATL2C9JE40 543 aaKnown RBP17.98■□□□□ 0.47
CCDC40-202ENST00000374876 CTAGE5O15320 804 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 AP5Z1O43299 807 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 ALX1Q15699 326 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 OTUD7BQ6GQQ9 843 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 FAM83AQ86UY5 434 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 FAM151AQ8WW52 585 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 NAPBQ9H115 298 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 ARMT1Q9H993 441 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 CBX8Q9HC52 389 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 PPP2R3BQ9Y5P8 575 aa17.98■□□□□ 0.47
CCDC40-202ENST00000374876 ZMYM6O95789 1325 aa17.97■□□□□ 0.47
CCDC40-202ENST00000374876 B4E1Z4 1266 aa17.97■□□□□ 0.47
CCDC40-202ENST00000374876 SH2B2O14492 632 aaPredicted RBP17.97■□□□□ 0.47
CCDC40-202ENST00000374876 MBD4O95243 580 aa17.97■□□□□ 0.47
CCDC40-202ENST00000374876 PLCG2P16885 1265 aa17.97■□□□□ 0.47
CCDC40-202ENST00000374876 METAP2P50579 478 aaKnown RBP eCLIP17.97■□□□□ 0.47
CCDC40-202ENST00000374876 MOB2Q70IA6 237 aa17.97■□□□□ 0.47
CCDC40-202ENST00000374876 MAPKAPK5Q8IW41 473 aa17.97■□□□□ 0.47
CCDC40-202ENST00000374876 LCORLQ8N3X6 602 aa17.97■□□□□ 0.47
CCDC40-202ENST00000374876 TMEM87BQ96K49 555 aa17.97■□□□□ 0.47
CCDC40-202ENST00000374876 RTEL1Q9NZ71 1219 aa17.97■□□□□ 0.47
CCDC40-202ENST00000374876 KINO60870 393 aaKnown RBP17.96■□□□□ 0.47
CCDC40-202ENST00000374876 CDKL5O76039 1030 aa17.96■□□□□ 0.47
CCDC40-202ENST00000374876 TMED8Q6PL24 325 aaPredicted RBP17.96■□□□□ 0.47
CCDC40-202ENST00000374876 BRAPQ7Z569 592 aa17.96■□□□□ 0.47
CCDC40-202ENST00000374876 IFNL3Q8IZI9 196 aa17.96■□□□□ 0.47
CCDC40-202ENST00000374876 ZNF830Q96NB3 372 aaPredicted RBP17.96■□□□□ 0.47
CCDC40-202ENST00000374876 GOLPH3LQ9H4A5 285 aa17.96■□□□□ 0.47
CCDC40-202ENST00000374876 CAVIN2O95810 425 aa17.96■□□□□ 0.47
CCDC40-202ENST00000374876 FAM160A1Q05DH4 1040 aa17.96■□□□□ 0.47
CCDC40-202ENST00000374876 CPLX2Q6PUV4 134 aaKnown RBP17.96■□□□□ 0.47
CCDC40-202ENST00000374876 SH3BP5LQ7L8J4 393 aa17.96■□□□□ 0.47
CCDC40-202ENST00000374876 GBA2Q9HCG7 927 aaPredicted RBP17.96■□□□□ 0.47
CCDC40-202ENST00000374876 TRPM7Q96QT4 1865 aa17.96■□□□□ 0.47
CCDC40-202ENST00000374876 NEDD4P46934 1319 aa17.95■□□□□ 0.46
CCDC40-202ENST00000374876 DDTLA6NHG4 134 aaPredicted RBP17.95■□□□□ 0.46
CCDC40-202ENST00000374876 GOLGA6L6A8MZA4 724 aa17.95■□□□□ 0.46
CCDC40-202ENST00000374876 ENTPD3O75355 529 aa17.95■□□□□ 0.46
CCDC40-202ENST00000374876 POLR3DP05423 398 aaPredicted RBP17.95■□□□□ 0.46
CCDC40-202ENST00000374876 TPM2P07951 284 aa17.95■□□□□ 0.46
CCDC40-202ENST00000374876 ZNF165P49910 485 aa17.95■□□□□ 0.46
CCDC40-202ENST00000374876 TTLL12Q14166 644 aaPredicted RBP17.95■□□□□ 0.46
CCDC40-202ENST00000374876 SF3A1Q15459 793 aaKnown RBP17.95■□□□□ 0.46
CCDC40-202ENST00000374876 NFXL1Q6ZNB6 911 aa17.95■□□□□ 0.46
CCDC40-202ENST00000374876 ZSCAN29Q8IWY8 852 aaPredicted RBP17.95■□□□□ 0.46
CCDC40-202ENST00000374876 FSIP1Q8NA03 581 aa17.95■□□□□ 0.46
CCDC40-202ENST00000374876 TTC12Q9H892 705 aaPredicted RBP17.95■□□□□ 0.46
CCDC40-202ENST00000374876 ABT1Q9ULW3 272 aaKnown RBP17.95■□□□□ 0.46
CCDC40-202ENST00000374876 PRKAB2O43741 272 aa17.94■□□□□ 0.46
CCDC40-202ENST00000374876 TPM3P06753 285 aa17.94■□□□□ 0.46
CCDC40-202ENST00000374876 SLURP2P0DP57 97 aa17.94■□□□□ 0.46
CCDC40-202ENST00000374876 NF2P35240 595 aa17.94■□□□□ 0.46
CCDC40-202ENST00000374876 SNW1Q13573 536 aaKnown RBP17.94■□□□□ 0.46
CCDC40-202ENST00000374876 SUPT20HL1Q3ZLR7 823 aa17.94■□□□□ 0.46
CCDC40-202ENST00000374876 MIGA2Q7L4E1 593 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms