RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 DYNLL2Q96FJ2 89 aa26.12■■□□□ 1.77
CCDC28B-201ENST00000373602 TXNRD2Q9NNW7 524 aa26.12■■□□□ 1.77
CCDC28B-201ENST00000373602 RBPJLQ9UBG7 517 aa26.12■■□□□ 1.77
CCDC28B-201ENST00000373602 TTC41PQ6P2S7 1318 aa26.12■■□□□ 1.77
CCDC28B-201ENST00000373602 USP17L15C9J2P7 530 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 USP17L13C9JLJ4 530 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 USP17L12C9JPN9 530 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 USP17L11C9JVI0 530 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 USP17L21D6R901 530 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 USP17L18D6R9N7 530 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 USP17L22D6RA61 530 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 USP17L17D6RBQ6 530 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 USP17L19D6RCP7 530 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 USP17L20D6RJB6 530 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 MPHOSPH10O00566 681 aaKnown RBP26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 USP17L24Q0WX57 530 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 GPRC5AQ8NFJ5 357 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 DDRGK1Q96HY6 314 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 GJD2Q9UKL4 321 aa26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 BAZ2AQ9UIF9 1905 aaKnown RBP26.11■■□□□ 1.77
CCDC28B-201ENST00000373602 PEX10O60683 326 aa26.1■■□□□ 1.77
CCDC28B-201ENST00000373602 ELNP15502 786 aa26.1■■□□□ 1.77
CCDC28B-201ENST00000373602 AMOTL1Q8IY63 956 aa26.1■■□□□ 1.77
CCDC28B-201ENST00000373602 STRBPQ96SI9 672 aaKnown RBP26.1■■□□□ 1.77
CCDC28B-201ENST00000373602 CYP2D7A0A087X1C5 515 aa26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 SMIM22K7EJ46 135 aa26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 RNF113AO15541 343 aaKnown RBP26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 GJB1P08034 283 aa26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 VCAM1P19320 739 aa26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 POTEEQ6S8J3 1075 aa26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 CATSPERGQ6ZRH7 1159 aa26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 TMEM179Q6ZVK1 233 aa26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 NKX2-3Q8TAU0 364 aa26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 OTUD7AQ8TE49 926 aaPredicted RBP26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 APPBP2Q92624 585 aa26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 RNF208Q9H0X6 261 aa26.09■■□□□ 1.77
CCDC28B-201ENST00000373602 INHAP05111 366 aa26.08■■□□□ 1.77
CCDC28B-201ENST00000373602 ZFYP08048 801 aaPredicted RBP26.08■■□□□ 1.77
CCDC28B-201ENST00000373602 CDK8P49336 464 aa26.08■■□□□ 1.77
CCDC28B-201ENST00000373602 ERVK-9P63128 1117 aa26.08■■□□□ 1.77
CCDC28B-201ENST00000373602 ERVK-24P63145 666 aa26.08■■□□□ 1.77
CCDC28B-201ENST00000373602 Q3C1V9 767 aa26.08■■□□□ 1.77
CCDC28B-201ENST00000373602 CTR9Q6PD62 1173 aa26.08■■□□□ 1.77
CCDC28B-201ENST00000373602 PI4K2BQ8TCG2 481 aa26.08■■□□□ 1.77
CCDC28B-201ENST00000373602 OSBP2Q969R2 916 aa26.08■■□□□ 1.77
CCDC28B-201ENST00000373602 SHISA4Q96DD7 197 aa26.08■■□□□ 1.77
CCDC28B-201ENST00000373602 A0A1W2PRG0 241 aa26.07■■□□□ 1.76
CCDC28B-201ENST00000373602 ERC2O15083 957 aa26.07■■□□□ 1.76
CCDC28B-201ENST00000373602 AKR1B1P15121 316 aa26.07■■□□□ 1.76
CCDC28B-201ENST00000373602 GJA8P48165 433 aa26.07■■□□□ 1.76
CCDC28B-201ENST00000373602 C16orf86Q6ZW13 317 aa26.07■■□□□ 1.76
CCDC28B-201ENST00000373602 CCDC17Q96LX7 622 aa26.07■■□□□ 1.76
CCDC28B-201ENST00000373602 UNC93B1Q9H1C4 597 aa26.07■■□□□ 1.76
CCDC28B-201ENST00000373602 GLRX3O76003 335 aaKnown RBP26.06■■□□□ 1.76
CCDC28B-201ENST00000373602 PAGR1Q9BTK6 254 aa26.06■■□□□ 1.76
CCDC28B-201ENST00000373602 ARPP21Q9UBL0 812 aaPredicted RBP26.06■■□□□ 1.76
CCDC28B-201ENST00000373602 RABGAP1Q9Y3P9 1069 aa26.06■■□□□ 1.76
CCDC28B-201ENST00000373602 BRCA2P51587 3418 aa26.06■■□□□ 1.76
CCDC28B-201ENST00000373602 MAPK4P31152 587 aa26.05■■□□□ 1.76
CCDC28B-201ENST00000373602 HDAC1Q13547 482 aaPredicted RBP26.05■■□□□ 1.76
CCDC28B-201ENST00000373602 GIMAP6Q6P9H5 292 aa26.05■■□□□ 1.76
CCDC28B-201ENST00000373602 LBX2Q6XYB7 198 aa26.05■■□□□ 1.76
CCDC28B-201ENST00000373602 RPAP3Q9H6T3 665 aaPredicted RBP26.05■■□□□ 1.76
CCDC28B-201ENST00000373602 MYH8P13535 1937 aa26.05■■□□□ 1.76
CCDC28B-201ENST00000373602 GSG1L2A8MUP6 293 aa26.04■■□□□ 1.76
CCDC28B-201ENST00000373602 CNMDO75829 334 aa26.04■■□□□ 1.76
CCDC28B-201ENST00000373602 MX1P20591 662 aa26.04■■□□□ 1.76
CCDC28B-201ENST00000373602 LRRFIP1Q32MZ4 808 aaKnown RBP26.04■■□□□ 1.76
CCDC28B-201ENST00000373602 SBK1Q52WX2 424 aa26.04■■□□□ 1.76
CCDC28B-201ENST00000373602 SIAH1Q8IUQ4 282 aa26.04■■□□□ 1.76
CCDC28B-201ENST00000373602 PORCNQ9H237 461 aa26.04■■□□□ 1.76
CCDC28B-201ENST00000373602 SALL3Q9BXA9 1300 aa26.04■■□□□ 1.76
CCDC28B-201ENST00000373602 PLXNB2O15031 1838 aa26.03■■□□□ 1.76
CCDC28B-201ENST00000373602 GPAA1O43292 621 aa26.03■■□□□ 1.76
CCDC28B-201ENST00000373602 U2AF1L4Q8WU68 220 aaKnown RBP26.03■■□□□ 1.76
CCDC28B-201ENST00000373602 GCC1Q96CN9 775 aa26.03■■□□□ 1.76
CCDC28B-201ENST00000373602 HMGCRP04035 888 aa26.02■■□□□ 1.76
CCDC28B-201ENST00000373602 ICA1Q05084 483 aa26.02■■□□□ 1.76
CCDC28B-201ENST00000373602 AAMPQ13685 434 aa26.02■■□□□ 1.76
CCDC28B-201ENST00000373602 ANKRD45Q5TZF3 282 aa26.02■■□□□ 1.76
CCDC28B-201ENST00000373602 SOCS4Q8WXH5 440 aa26.02■■□□□ 1.76
CCDC28B-201ENST00000373602 NUDT12Q9BQG2 462 aa26.02■■□□□ 1.76
CCDC28B-201ENST00000373602 ARHGEF10LQ9HCE6 1279 aa26.02■■□□□ 1.76
CCDC28B-201ENST00000373602 ZBTB47Q9UFB7 747 aaPredicted RBP26.02■■□□□ 1.76
CCDC28B-201ENST00000373602 SPDYE16A6NNV3 312 aaPredicted RBP26.01■■□□□ 1.75
CCDC28B-201ENST00000373602 M0R2C6 588 aa26.01■■□□□ 1.75
CCDC28B-201ENST00000373602 SGPL1O95470 568 aa26.01■■□□□ 1.75
CCDC28B-201ENST00000373602 GNAT2P19087 354 aa26.01■■□□□ 1.75
CCDC28B-201ENST00000373602 GPR142Q7Z601 462 aa26.01■■□□□ 1.75
CCDC28B-201ENST00000373602 CLEC10AQ8IUN9 316 aa26.01■■□□□ 1.75
CCDC28B-201ENST00000373602 CCAR1Q8IX12 1150 aaKnown RBP26.01■■□□□ 1.75
CCDC28B-201ENST00000373602 PAK6Q9NQU5 681 aaPredicted RBP26.01■■□□□ 1.75
CCDC28B-201ENST00000373602 TMX2Q9Y320 296 aa26.01■■□□□ 1.75
CCDC28B-201ENST00000373602 XRCC5P13010 732 aaKnown RBP26■■□□□ 1.75
CCDC28B-201ENST00000373602 CYP2B6P20813 491 aa26■■□□□ 1.75
CCDC28B-201ENST00000373602 CCNA1P78396 465 aa26■■□□□ 1.75
CCDC28B-201ENST00000373602 KIAA1755Q5JYT7 1200 aa26■■□□□ 1.75
CCDC28B-201ENST00000373602 PLEKHH3Q7Z736 793 aa26■■□□□ 1.75
CCDC28B-201ENST00000373602 UBE2Q1Q7Z7E8 422 aa26■■□□□ 1.75
CCDC28B-201ENST00000373602 LPAR1Q92633 364 aa26■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms