RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 TRIM10Q9UDY6 481 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 HPCAL4Q9UM19 191 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 THEMIS2Q5TEJ8 643 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 PARD3BQ8TEW8 1205 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 KRT12Q99456 494 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 MYD88Q99836 296 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 STIM2Q9P246 746 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 CEP126Q9P2H0 1117 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 TFR2Q9UP52 801 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 TBC1D2BQ9UPU7 963 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 SSH2Q76I76 1423 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 MINDY4BA8MYZ0 360 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 ATP5J2-PTCD1G3V325 749 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 PTCD1O75127 700 aaKnown RBP13.1□□□□□ -0.31
PTPN1-201ENST00000371621 ADD1P35611 737 aaKnown RBP13.1□□□□□ -0.31
PTPN1-201ENST00000371621 SETDB1Q15047 1291 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 CYB5D1Q6P9G0 228 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 TRIM65Q6PJ69 517 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 KAT2BQ92831 832 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 DPH5Q9H2P9 285 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 C19orf44Q9H6X5 657 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 FAM207AQ9NSI2 230 aaPredicted RBP13.1□□□□□ -0.31
PTPN1-201ENST00000371621 KCNJ14Q9UNX9 436 aa13.1□□□□□ -0.31
PTPN1-201ENST00000371621 PTPRTO14522 1441 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 LGR5O75473 907 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 UBA7P41226 1012 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 EPHB4P54760 987 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 FAM69CQ0P6D2 419 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 CFAP221Q4G0U5 840 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 TCERG1LQ5VWI1 586 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 ADAT2Q7Z6V5 191 aaKnown RBP13.09□□□□□ -0.31
PTPN1-201ENST00000371621 HOMEZQ8IX15 550 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 NSUN7Q8NE18 718 aaKnown RBP13.09□□□□□ -0.31
PTPN1-201ENST00000371621 MAP4K1Q92918 833 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 MRRFQ96E11 262 aaKnown RBP13.09□□□□□ -0.31
PTPN1-201ENST00000371621 ELAC2Q9BQ52 826 aaKnown RBP13.09□□□□□ -0.31
PTPN1-201ENST00000371621 LLPHQ9BRT6 129 aaKnown RBP13.09□□□□□ -0.31
PTPN1-201ENST00000371621 PHF23Q9BUL5 403 aaPredicted RBP13.09□□□□□ -0.31
PTPN1-201ENST00000371621 CD109Q6YHK3 1445 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 KRT18P05783 430 aaKnown RBP13.09□□□□□ -0.31
PTPN1-201ENST00000371621 CASP1P29466 404 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 MMP14P50281 582 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 HDLBPQ00341 1268 aaKnown RBP13.09□□□□□ -0.31
PTPN1-201ENST00000371621 KRT40Q6A162 431 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 ZNF365Q70YC5 407 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 ARMC9Q7Z3E5 817 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 UBE3BQ7Z3V4 1068 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 C2CD5Q86YS7 1000 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 FMR1NBQ8N0W7 255 aaPredicted RBP13.09□□□□□ -0.31
PTPN1-201ENST00000371621 CCDC61Q9Y6R9 512 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 PIK3R4Q99570 1358 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 CROCC2H7BZ55 1655 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 GPTP24298 496 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 ZNF131P52739 623 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 USP14P54578 494 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 ANKRD24Q8TF21 1146 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 ZNF473Q8WTR7 871 aaKnown RBP13.09□□□□□ -0.31
PTPN1-201ENST00000371621 OSBPL1AQ9BXW6 950 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 TRIM7Q9C029 511 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 ANKZF1Q9H8Y5 726 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 L3MBTL1Q9Y468 752 aa13.09□□□□□ -0.31
PTPN1-201ENST00000371621 LUC7L3O95232 432 aaKnown RBP13.08□□□□□ -0.32
PTPN1-201ENST00000371621 CCDC93Q567U6 631 aa13.08□□□□□ -0.32
PTPN1-201ENST00000371621 CCDC97Q96F63 343 aaPredicted RBP13.08□□□□□ -0.32
PTPN1-201ENST00000371621 AIFM3Q96NN9 605 aa13.08□□□□□ -0.32
PTPN1-201ENST00000371621 STAP2Q9UGK3 403 aa13.08□□□□□ -0.32
PTPN1-201ENST00000371621 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.08□□□□□ -0.32
PTPN1-201ENST00000371621 PSMA7O14818 248 aa13.08□□□□□ -0.32
PTPN1-201ENST00000371621 LSP1P33241 339 aa13.08□□□□□ -0.32
PTPN1-201ENST00000371621 STMN2Q93045 179 aa13.08□□□□□ -0.32
PTPN1-201ENST00000371621 LRRC45Q96CN5 670 aa13.08□□□□□ -0.32
PTPN1-201ENST00000371621 GPHNQ9NQX3 736 aaPredicted RBP13.08□□□□□ -0.32
PTPN1-201ENST00000371621 TXNDC9O14530 226 aa13.08□□□□□ -0.32
PTPN1-201ENST00000371621 PPP1R37O75864 691 aa13.08□□□□□ -0.32
PTPN1-201ENST00000371621 EIF4A2Q14240 407 aaKnown RBP13.08□□□□□ -0.32
PTPN1-201ENST00000371621 ZNF174Q15697 407 aa13.08□□□□□ -0.32
PTPN1-201ENST00000371621 RTEL1Q9NZ71 1219 aa13.08□□□□□ -0.32
PTPN1-201ENST00000371621 MYO5CQ9NQX4 1742 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 hCG_1642624A0A1W2PR95 340 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 FOXN1O15353 648 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 UPP2O95045 317 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 NECTIN1Q15223 517 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 MTHFSDQ2M296 383 aaKnown RBP13.07□□□□□ -0.32
PTPN1-201ENST00000371621 MPRIPQ6WCQ1 1025 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 FAM47EQ6ZV65 393 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 ZKSCAN3Q9BRR0 538 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 RIMS2Q9UQ26 1411 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 TRIM75PA6NK02 468 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 SNUPNO95149 360 aaKnown RBP13.07□□□□□ -0.32
PTPN1-201ENST00000371621 ATP1A1P05023 1023 aaKnown RBP13.07□□□□□ -0.32
PTPN1-201ENST00000371621 ERFP50548 548 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 CCNHP51946 323 aaPredicted RBP13.07□□□□□ -0.32
PTPN1-201ENST00000371621 TMED1Q13445 227 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 TTF1Q15361 905 aaPredicted RBP13.07□□□□□ -0.32
PTPN1-201ENST00000371621 RAD9BQ6WBX8 426 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 TRIM58Q8NG06 486 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 ARL8AQ96BM9 186 aa13.07□□□□□ -0.32
PTPN1-201ENST00000371621 EAF2Q96CJ1 260 aaPredicted RBP13.07□□□□□ -0.32
PTPN1-201ENST00000371621 CFAP65Q6ZU64 1925 aaKnown RBP13.07□□□□□ -0.32
PTPN1-201ENST00000371621 FGFR1OPO95684 399 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms