RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 DNM1Q05193 864 aaKnown RBP12.16□□□□□ -0.46
CLIP1-203ENST00000361654 ZNF449Q6P9G9 518 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 TICAM2Q86XR7 235 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 ZNF526Q8TF50 670 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-203ENST00000361654 TTLL3Q9Y4R7 772 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 NUB1Q9Y5A7 615 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 SEC24BO95487 1268 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 AK2P54819 239 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 TPH2Q8IWU9 490 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 ATRIPQ8WXE1 791 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 DNAJC25Q9H1X3 360 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 WDR17Q8IZU2 1322 aa12.15□□□□□ -0.46
CLIP1-203ENST00000361654 TLDC2A0PJX2 215 aa12.15□□□□□ -0.46
CLIP1-203ENST00000361654 CSGALNACT2Q8N6G5 542 aa12.15□□□□□ -0.46
CLIP1-203ENST00000361654 LLPHQ9BRT6 129 aaKnown RBP12.15□□□□□ -0.46
CLIP1-203ENST00000361654 LIG4P49917 911 aa12.15□□□□□ -0.46
CLIP1-203ENST00000361654 ICA1Q05084 483 aa12.15□□□□□ -0.46
CLIP1-203ENST00000361654 PPP2R5DQ14738 602 aa12.15□□□□□ -0.46
CLIP1-203ENST00000361654 KIAA1841Q6NSI8 718 aa12.15□□□□□ -0.46
CLIP1-203ENST00000361654 MAIP1Q8WWC4 291 aa12.15□□□□□ -0.46
CLIP1-203ENST00000361654 ZNF594Q96JF6 807 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-203ENST00000361654 RAB3IPQ96QF0 476 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-203ENST00000361654 NUP58Q9BVL2 599 aa12.15□□□□□ -0.46
CLIP1-203ENST00000361654 IREB2P48200 963 aaKnown RBP12.15□□□□□ -0.46
CLIP1-203ENST00000361654 CTTNBP2NLQ9P2B4 639 aa12.15□□□□□ -0.46
CLIP1-203ENST00000361654 DOK7Q18PE1 504 aa12.15□□□□□ -0.47
CLIP1-203ENST00000361654 GOLGA5Q8TBA6 731 aa12.15□□□□□ -0.47
CLIP1-203ENST00000361654 TPCN1Q9ULQ1 816 aa12.15□□□□□ -0.47
CLIP1-203ENST00000361654 KRT10P13645 584 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 HSPA1LP34931 641 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 CTSWP56202 376 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 MYL5Q02045 173 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 DIS3L2Q8IYB7 885 aaKnown RBP12.14□□□□□ -0.47
CLIP1-203ENST00000361654 KBTBD3Q8NAB2 608 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 PTPREP23469 700 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 DALRD3Q5D0E6 543 aaKnown RBP12.14□□□□□ -0.47
CLIP1-203ENST00000361654 FAM102BQ5T8I3 360 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 FBXO11Q86XK2 927 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 BBS5Q8N3I7 341 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 EDC4Q6P2E9 1401 aaKnown RBP12.14□□□□□ -0.47
CLIP1-203ENST00000361654 PPEF1O14829 653 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-203ENST00000361654 CCDC93Q567U6 631 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 TRIM50Q86XT4 487 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 CCDC17Q96LX7 622 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-203ENST00000361654 TRIM37O94972 964 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 SARNPP82979 210 aaKnown RBP12.14□□□□□ -0.47
CLIP1-203ENST00000361654 XKR9Q5GH70 373 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 NCAPGQ9BPX3 1015 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 SUGCTQ9HAC7 445 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 PPANQ9NQ55 473 aaKnown RBP12.14□□□□□ -0.47
CLIP1-203ENST00000361654 ST7Q9NRC1 585 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 CTNND2Q9UQB3 1225 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 ZNF532Q9HCE3 1301 aa12.14□□□□□ -0.47
CLIP1-203ENST00000361654 SLC9C1Q4G0N8 1177 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 CCDC122Q5T0U0 273 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 METTL23Q86XA0 190 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 ATP2C2O75185 946 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 CHMLP26374 656 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 IFT81Q8WYA0 676 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 TEKT3Q9BXF9 490 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 SMIM23A6NLE4 172 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 CUTAO60888 179 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 ZSCAN20P17040 1043 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-203ENST00000361654 SLFN12Q8IYM2 578 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 RETREG2Q8NC44 543 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 USTQ9Y2C2 406 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 WDR62O43379 1518 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 SYCP2Q9BX26 1530 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 TLR3O15455 904 aaKnown RBP12.13□□□□□ -0.47
CLIP1-203ENST00000361654 RPS6KB1P23443 525 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 ABCB5Q2M3G0 1257 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 ZSCAN23Q3MJ62 389 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 ODR4Q5SWX8 454 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 CABP7Q86V35 215 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 MMS19Q96T76 1030 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 SEC62Q99442 399 aaKnown RBP12.13□□□□□ -0.47
CLIP1-203ENST00000361654 ERBB4Q15303 1308 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 SMCO2A6NFE2 343 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 GNA14O95837 355 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 ANO1Q5XXA6 986 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 CASC4Q6P4E1 433 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 CROCCP2Q86T23 111 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 ZNF496Q96IT1 587 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-203ENST00000361654 PSTPIP2Q9H939 334 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 CCPG1Q9ULG6 757 aa12.13□□□□□ -0.47
CLIP1-203ENST00000361654 AKR1B15C9JRZ8 316 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-203ENST00000361654 FOSP01100 380 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-203ENST00000361654 RNASELQ05823 741 aaKnown RBP12.12□□□□□ -0.47
CLIP1-203ENST00000361654 INTS4Q96HW7 963 aaKnown RBP12.12□□□□□ -0.47
CLIP1-203ENST00000361654 CAPZA3Q96KX2 299 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 CALCOCO1Q9P1Z2 691 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 LEMD3Q9Y2U8 911 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 TRAPPC8Q9Y2L5 1435 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 A0A1W2PP64 1363 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 XDHP47989 1333 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 N4BP1O75113 896 aaKnown RBP12.12□□□□□ -0.47
CLIP1-203ENST00000361654 SCNN1DP51172 638 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 PPP2R5AQ15172 486 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 C2orf69Q8N8R5 385 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms