RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 KRT25Q7Z3Z0 450 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 DBNDD1Q9H9R9 158 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 PALM3A6NDB9 673 aaPredicted RBP17.33■□□□□ 0.37
PTPRF-201ENST00000359947 STK10O94804 968 aaKnown RBP17.33■□□□□ 0.37
PTPRF-201ENST00000359947 CYP2J2P51589 502 aa17.33■□□□□ 0.37
PTPRF-201ENST00000359947 CABP7Q86V35 215 aa17.33■□□□□ 0.37
PTPRF-201ENST00000359947 PPEF1O14829 653 aaPredicted RBP17.33■□□□□ 0.36
PTPRF-201ENST00000359947 NR1I2O75469 434 aa17.33■□□□□ 0.36
PTPRF-201ENST00000359947 IGSF22Q8N9C0 903 aa17.33■□□□□ 0.36
PTPRF-201ENST00000359947 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.33■□□□□ 0.36
PTPRF-201ENST00000359947 ZWINTO95229 277 aa17.33■□□□□ 0.36
PTPRF-201ENST00000359947 SYT10Q6XYQ8 523 aa17.33■□□□□ 0.36
PTPRF-201ENST00000359947 TSGA10Q9BZW7 698 aa17.33■□□□□ 0.36
PTPRF-201ENST00000359947 WDR62O43379 1518 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 C4orf50Q6ZRC1 276 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 FAM196AQ6ZSG2 479 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 ATP2B4P23634 1241 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 CRKLP46109 303 aaKnown RBP17.32■□□□□ 0.36
PTPRF-201ENST00000359947 PCDHB13Q9Y5F0 798 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 LOC102724428A0A0B4J2F2 783 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 SPDYE16A6NNV3 312 aaPredicted RBP17.32■□□□□ 0.36
PTPRF-201ENST00000359947 SIK1P57059 783 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 NOLC1Q14978 699 aaKnown RBP eCLIP17.32■□□□□ 0.367e-7■■□□□ 12.4
PTPRF-201ENST00000359947 SPDYE2Q495Y8 402 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 SNX14Q9Y5W7 946 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 CNKSR1Q969H4 720 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 SYNRGQ9UMZ2 1314 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 CCDC160A6NGH7 325 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 EIF4A1P60842 406 aaKnown RBP17.32■□□□□ 0.36
PTPRF-201ENST00000359947 MYL5Q02045 173 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 PSMB7Q99436 277 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 SEC62Q99442 399 aaKnown RBP17.32■□□□□ 0.36
PTPRF-201ENST00000359947 PSTPIP2Q9H939 334 aa17.32■□□□□ 0.36
PTPRF-201ENST00000359947 PHKG2P15735 406 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 GTF3C6Q969F1 213 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 BAG1Q99933 345 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-201ENST00000359947 ASAP1Q9ULH1 1129 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 CHRNDQ07001 517 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 AFG3L2Q9Y4W6 797 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 NUP160Q12769 1436 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 RAD17O75943 681 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 CTTNBP2NLQ9P2B4 639 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 ARPP21Q9UBL0 812 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-201ENST00000359947 LTKP29376 864 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 TECP42680 631 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 ANAPC4Q9UJX5 808 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 ITIH3Q06033 890 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 PAK1Q13153 545 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 XKR9Q5GH70 373 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 ZNF772Q68DY9 489 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-201ENST00000359947 OPA1O60313 960 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 HSPA1LP34931 641 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 PABPC4Q13310 644 aaKnown RBP eCLIP17.31■□□□□ 0.36
PTPRF-201ENST00000359947 CNGA4Q8IV77 575 aa17.31■□□□□ 0.36
PTPRF-201ENST00000359947 HSPA4P34932 840 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 UBXN2AP68543 259 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 POLA2Q14181 598 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 TESK2Q96S53 571 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 LZTS2Q9BRK4 669 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 TNNC1P63316 161 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 ICA1Q05084 483 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 TBC1D10BQ4KMP7 808 aaPredicted RBP17.3■□□□□ 0.36
PTPRF-201ENST00000359947 IPO4Q8TEX9 1081 aaKnown RBP17.3■□□□□ 0.36
PTPRF-201ENST00000359947 CD2APQ9Y5K6 639 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 CCPG1Q9ULG6 757 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 GPATCH11Q8N954 259 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 BIVM-ERCC5R4GMW8 1640 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 SYNJ2BP-COX16A0A087WUM0 186 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 POLR2MP0CAP2 368 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 SCYL2Q6P3W7 929 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 COX16Q9P0S2 106 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 GMNNO75496 209 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 ANKS4BQ8N8V4 417 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 ANKFY1Q9P2R3 1169 aa17.3■□□□□ 0.36
PTPRF-201ENST00000359947 KIAA0556O60303 1618 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 TMEM232C9JQI7 657 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 FAM160A1Q05DH4 1040 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 ITKQ08881 620 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 ZNF365Q70YC5 407 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 GPKOWQ92917 476 aaPredicted RBP eCLIP17.29■□□□□ 0.36
PTPRF-201ENST00000359947 CSRNP2Q9H175 543 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 SETD1BQ9UPS6 1966 aaKnown RBP17.29■□□□□ 0.36
PTPRF-201ENST00000359947 NLGN1Q8N2Q7 840 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 PRKAG2Q9UGJ0 569 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 RSPH14Q9UHP6 348 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 E7EWF7 191 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 KRT27Q7Z3Y8 459 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 SPATA24Q86W54 205 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 CAPN9O14815 690 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 LIG4P49917 911 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 LRRC24Q50LG9 513 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 SEC24BO95487 1268 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 SEPT14Q6ZU15 432 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 TAB2Q9NYJ8 693 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 JAK2O60674 1132 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 FMNL3Q8IVF7 1028 aa17.29■□□□□ 0.36
PTPRF-201ENST00000359947 GPR161Q8N6U8 529 aaKnown RBP17.29■□□□□ 0.36
PTPRF-201ENST00000359947 GIPC1O14908 333 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 VAV2P52735 878 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 VWA3BQ502W6 1294 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms