RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PRKAB2O43741 272 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 IFNB1P01574 187 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 MYL3P08590 195 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 DHX32Q7L7V1 743 aaKnown RBP8.19□□□□□ -1.1
VPS13A-202ENST00000357409 VPS52Q8N1B4 723 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 DCAF5Q96JK2 942 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 CTAGE15A4D2H0 777 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 TMEM232C9JQI7 657 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 CTAGE8P0CG41 777 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 ALDH1B1P30837 517 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 BRDTQ58F21 947 aaPredicted RBP8.19□□□□□ -1.1
VPS13A-202ENST00000357409 CTAGE6Q86UF2 777 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 CTAGE4Q8IX94 777 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 WDR48Q8TAF3 677 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 SAMSN1Q9NSI8 373 aaKnown RBP8.19□□□□□ -1.1
VPS13A-202ENST00000357409 DNM3Q9UQ16 869 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 USP19O94966 1318 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 TBC1D8O95759 1140 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 ASIC2Q16515 512 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 CALCRLQ16602 461 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 ZSCAN30Q86W11 494 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 NXF1Q9UBU9 619 aaKnown RBP8.19□□□□□ -1.1
VPS13A-202ENST00000357409 RPS8P62241 208 aaKnown RBP8.19□□□□□ -1.1
VPS13A-202ENST00000357409 USP17L2Q6R6M4 530 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 CTAGE3PQ8IX95 158 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 SLITRK6Q9H5Y7 841 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 ZNF277Q9NRM2 450 aaPredicted RBP8.19□□□□□ -1.1
VPS13A-202ENST00000357409 DNAJC17Q9NVM6 304 aaKnown RBP8.19□□□□□ -1.1
VPS13A-202ENST00000357409 INO80B-WBP1J3KQ70 363 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 SERPINB2P05120 415 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 ARID4AP29374 1257 aaPredicted RBP8.18□□□□□ -1.1
VPS13A-202ENST00000357409 TRAPPC10P48553 1259 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 CARD6Q9BX69 1037 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 INO80BQ9C086 356 aaPredicted RBP8.18□□□□□ -1.1
VPS13A-202ENST00000357409 TDRD3Q9H7E2 651 aaKnown RBP8.18□□□□□ -1.1
VPS13A-202ENST00000357409 SPC25Q9HBM1 224 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 RMND1Q9NWS8 449 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 SNX14Q9Y5W7 946 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 MIER3Q7Z3K6 550 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 GSDMBQ8TAX9 411 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 LRRC45Q96CN5 670 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 SH2D3AQ9BRG2 576 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 DPH5Q9H2P9 285 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 CEP104O60308 925 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 GNA11P29992 359 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 ATICP31939 592 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 DNM2P50570 870 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 DYNLT1P63172 113 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 CHRNDQ07001 517 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 LINS1Q8NG48 757 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 IP6K1Q92551 441 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 TLR7Q9NYK1 1049 aaKnown RBP8.18□□□□□ -1.1
VPS13A-202ENST00000357409 LRFN2Q9ULH4 789 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 INF2Q27J81 1249 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 SMYD4Q8IYR2 804 aaPredicted RBP8.18□□□□□ -1.1
VPS13A-202ENST00000357409 ANKRD44Q8N8A2 993 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 NUB1Q9Y5A7 615 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.18□□□□□ -1.19e-7■■□□□ 14
VPS13A-202ENST00000357409 ADGRL1O94910 1474 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 EYA2O00167 538 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 TACC1O75410 805 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 SCARA5Q6ZMJ2 495 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 CPLX4Q7Z7G2 160 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 SPATA24Q86W54 205 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 CEP112Q8N8E3 955 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 DYNLL2Q96FJ2 89 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 DAPK1P53355 1430 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 CTAGE5O15320 804 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 LIG4P49917 911 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 MYSM1Q5VVJ2 828 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 DDX21Q9NR30 783 aaKnown RBP eCLIP8.18□□□□□ -1.1
VPS13A-202ENST00000357409 CTTNBP2NLQ9P2B4 639 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 GRIN2BQ13224 1484 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 CCDC171Q6TFL3 1326 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 CHMLP26374 656 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 ZNF131P52739 623 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 MAP9Q49MG5 647 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 TRIM7Q9C029 511 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 KIF21BO75037 1637 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 GAS8O95995 478 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 SLC8A3P57103 927 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 TEKT1Q969V4 418 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 RILPQ96NA2 401 aa8.18□□□□□ -1.1
VPS13A-202ENST00000357409 ZSCAN16Q9H4T2 348 aaPredicted RBP8.18□□□□□ -1.1
VPS13A-202ENST00000357409 HOXA13P31271 388 aaPredicted RBP8.17□□□□□ -1.1
VPS13A-202ENST00000357409 PLBD2Q8NHP8 589 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 NLRP4Q96MN2 994 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 FAM49AQ9H0Q0 323 aaPredicted RBP8.17□□□□□ -1.1
VPS13A-202ENST00000357409 CCPG1Q9ULG6 757 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 PCDHA12Q9UN75 941 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 SH3TC1Q8TE82 1336 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 PUM3Q15397 648 aaKnown RBP8.17□□□□□ -1.1
VPS13A-202ENST00000357409 CDO1Q16878 200 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 IFNLR1Q8IU57 520 aaPredicted RBP8.17□□□□□ -1.1
VPS13A-202ENST00000357409 HABP4Q5JVS0 413 aaKnown RBP8.17□□□□□ -1.1
VPS13A-202ENST00000357409 KIAA1841Q6NSI8 718 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 SLF1Q9BQI6 1058 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.17□□□□□ -1.1
VPS13A-202ENST00000357409 WDR97A6NE52 1622 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 ZFYP08048 801 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms