RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ARMT1Q9H993 441 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 VCX3AQ9NNX9 186 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 ZNF277Q9NRM2 450 aaPredicted RBP7.16□□□□□ -1.26
UPF2-201ENST00000356352 PCK1P35558 622 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 ZNF131P52739 623 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 SND1Q7KZF4 910 aaKnown RBP eCLIP7.16□□□□□ -1.26
UPF2-201ENST00000356352 RBSNQ9H1K0 784 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 VPS16Q9H269 839 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 SBNO1A3KN83 1393 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 ARHGAP6O43182 974 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 XRCC6P12956 609 aaKnown RBP eCLIP7.16□□□□□ -1.26
UPF2-201ENST00000356352 RXRAP19793 462 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 HPDP32754 393 aaPredicted RBP7.16□□□□□ -1.26
UPF2-201ENST00000356352 FANCCQ00597 558 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 TNFAIP1Q13829 316 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 RPS6KA1Q15418 735 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 CABP7Q86V35 215 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 MRPL44Q9H9J2 332 aaKnown RBP7.16□□□□□ -1.26
UPF2-201ENST00000356352 NDUFAB1O14561 156 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 KLHL30Q0D2K2 578 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 PABPC4Q13310 644 aaKnown RBP eCLIP7.15□□□□□ -1.26
UPF2-201ENST00000356352 DIS3L2Q8IYB7 885 aaKnown RBP7.15□□□□□ -1.26
UPF2-201ENST00000356352 CSRNP1Q96S65 589 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 RASSF4Q9H2L5 321 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 ZBTB40Q9NUA8 1239 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 ZHX1Q9UKY1 873 aaPredicted RBP7.15□□□□□ -1.26
UPF2-201ENST00000356352 V9GY48 417 aaPredicted RBP7.15□□□□□ -1.26
UPF2-201ENST00000356352 GCNT3O95395 438 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 GCP02774 474 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 HERC4Q5GLZ8 1057 aaPredicted RBP7.15□□□□□ -1.26
UPF2-201ENST00000356352 SKAP1Q86WV1 359 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 VSIG1Q86XK7 387 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 PPP4R1Q8TF05 950 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 CHURC1Q8WUH1 139 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 ATP8A2Q9NTI2 1148 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 TPCN1Q9ULQ1 816 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 GPATCH8Q9UKJ3 1502 aaKnown RBP7.15□□□□□ -1.26
UPF2-201ENST00000356352 TROVE2P10155 538 aaKnown RBP eCLIP7.15□□□□□ -1.26
UPF2-201ENST00000356352 KRT3P12035 628 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 MAGEA1P43355 309 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 IRX3P78415 501 aaPredicted RBP7.15□□□□□ -1.26
UPF2-201ENST00000356352 HADHQ16836 314 aaKnown RBP7.15□□□□□ -1.26
UPF2-201ENST00000356352 ZBTB8OSQ8IWT0 167 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 NIM1KQ8IY84 436 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 CCDC105Q8IYK2 499 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 RAB20Q9NX57 234 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 PCDHB13Q9Y5F0 798 aa7.15□□□□□ -1.26
UPF2-201ENST00000356352 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.15□□□□□ -1.26
UPF2-201ENST00000356352 GPAA1O43292 621 aa7.15□□□□□ -1.27
UPF2-201ENST00000356352 BUB1BO60566 1050 aaPredicted RBP7.15□□□□□ -1.27
UPF2-201ENST00000356352 POSTNQ15063 836 aa7.15□□□□□ -1.27
UPF2-201ENST00000356352 PLCB4Q15147 1175 aa7.15□□□□□ -1.27
UPF2-201ENST00000356352 DENND2CQ68D51 928 aa7.15□□□□□ -1.27
UPF2-201ENST00000356352 SEPT14Q6ZU15 432 aa7.15□□□□□ -1.27
UPF2-201ENST00000356352 PEX26Q7Z412 305 aa7.15□□□□□ -1.27
UPF2-201ENST00000356352 SLFN12Q8IYM2 578 aa7.15□□□□□ -1.27
UPF2-201ENST00000356352 LARGE2Q8N3Y3 721 aa7.15□□□□□ -1.27
UPF2-201ENST00000356352 SLC17A8Q8NDX2 589 aa7.15□□□□□ -1.27
UPF2-201ENST00000356352 ARHGEF2Q92974 986 aaKnown RBP7.15□□□□□ -1.27
UPF2-201ENST00000356352 RUNDC3BQ96NL0 473 aa7.15□□□□□ -1.27
UPF2-201ENST00000356352 CPSF2Q9P2I0 782 aaKnown RBP7.15□□□□□ -1.27
UPF2-201ENST00000356352 PALM3A6NDB9 673 aaPredicted RBP7.14□□□□□ -1.27
UPF2-201ENST00000356352 WDR46O15213 610 aaKnown RBP7.14□□□□□ -1.27
UPF2-201ENST00000356352 POLR2DO15514 142 aaKnown RBP7.14□□□□□ -1.27
UPF2-201ENST00000356352 CEP104O60308 925 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 KRT19P08727 400 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 STMN1P16949 149 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 GALNT17Q6IS24 598 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 DEPTORQ8TB45 409 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 NELFBQ8WX92 580 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 KIF24Q5T7B8 1368 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 GOLGA8QA0A0J9YX86 632 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 GOLGA8OA6NCC3 632 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 GOLGA8NF8WBI6 632 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 RNF40O75150 1001 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 TNNC2P02585 160 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 OATP04181 439 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 CD19P15391 556 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 KRT15P19012 456 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 INPP5BP32019 993 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 KIF22Q14807 665 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 C8orf34Q49A92 452 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 CASC4Q6P4E1 433 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 BBOF1Q8ND07 529 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 RSAD2Q8WXG1 361 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 IPO11Q9UI26 975 aaKnown RBP7.14□□□□□ -1.27
UPF2-201ENST00000356352 AMFRQ9UKV5 643 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 USTQ9Y2C2 406 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 ABCC10Q5T3U5 1492 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 TTC36A6NLP5 189 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 STAM2O75886 525 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 NAA25Q14CX7 972 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 ANKRD20A3Q5VUR7 823 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 ZNF790Q6PG37 636 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 SPATA5Q8NB90 893 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 EYA1Q99502 592 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 DSCC1Q9BVC3 393 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 RABGAP1Q9Y3P9 1069 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 ARHGEF10O15013 1369 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 SETSIPP0DME0 302 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms