RNA–Protein interactions for RNA: ENST00000356316.7

CAPN3-204, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 1,291 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-204ENST00000356316 USP17L20D6RJB6 530 aa12.9□□□□□ -0.34
CAPN3-204ENST00000356316 HMGCRP04035 888 aa12.9□□□□□ -0.34
CAPN3-204ENST00000356316 MAPK4P31152 587 aa12.9□□□□□ -0.34
CAPN3-204ENST00000356316 USP17L24Q0WX57 530 aa12.9□□□□□ -0.34
CAPN3-204ENST00000356316 ZYXQ15942 572 aaKnown RBP12.9□□□□□ -0.34
CAPN3-204ENST00000356316 NUDT12Q9BQG2 462 aa12.9□□□□□ -0.34
CAPN3-204ENST00000356316 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.9□□□□□ -0.34
CAPN3-204ENST00000356316 HMX1Q9NP08 348 aaPredicted RBP12.9□□□□□ -0.34
CAPN3-204ENST00000356316 EMILIN3Q9NT22 766 aa12.9□□□□□ -0.34
CAPN3-204ENST00000356316 MCM9Q9NXL9 1143 aa12.9□□□□□ -0.34
CAPN3-204ENST00000356316 COLQQ9Y215 455 aaPredicted RBP12.9□□□□□ -0.34
CAPN3-204ENST00000356316 ZNF532Q9HCE3 1301 aa12.89□□□□□ -0.35
CAPN3-204ENST00000356316 MPHOSPH10O00566 681 aaKnown RBP12.89□□□□□ -0.35
CAPN3-204ENST00000356316 GLRX3O76003 335 aaKnown RBP12.89□□□□□ -0.35
CAPN3-204ENST00000356316 PDE6AP16499 860 aa12.89□□□□□ -0.35
CAPN3-204ENST00000356316 CYP2B6P20813 491 aa12.89□□□□□ -0.35
CAPN3-204ENST00000356316 SHROOM1Q2M3G4 852 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-204ENST00000356316 AMOTL1Q8IY63 956 aa12.89□□□□□ -0.35
CAPN3-204ENST00000356316 TRMT44Q8IYL2 757 aaKnown RBP12.89□□□□□ -0.35
CAPN3-204ENST00000356316 SOCS4Q8WXH5 440 aa12.89□□□□□ -0.35
CAPN3-204ENST00000356316 RIOK1Q9BRS2 568 aaKnown RBP12.89□□□□□ -0.35
CAPN3-204ENST00000356316 PAGR1Q9BTK6 254 aa12.89□□□□□ -0.35
CAPN3-204ENST00000356316 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.89□□□□□ -0.35
CAPN3-204ENST00000356316 PAK6Q9NQU5 681 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-204ENST00000356316 RBPJLQ9UBG7 517 aa12.89□□□□□ -0.35
CAPN3-204ENST00000356316 GJD2Q9UKL4 321 aa12.89□□□□□ -0.35
CAPN3-204ENST00000356316 RPTORQ8N122 1335 aa12.88□□□□□ -0.35
CAPN3-204ENST00000356316 EVI5O60447 810 aa12.88□□□□□ -0.35
CAPN3-204ENST00000356316 PLCD1P51178 756 aa12.88□□□□□ -0.35
CAPN3-204ENST00000356316 ERVK-9P63128 1117 aa12.88□□□□□ -0.35
CAPN3-204ENST00000356316 ERVK-24P63145 666 aa12.88□□□□□ -0.35
CAPN3-204ENST00000356316 CCNA1P78396 465 aa12.88□□□□□ -0.35
CAPN3-204ENST00000356316 SIRT2Q8IXJ6 389 aa12.88□□□□□ -0.35
CAPN3-204ENST00000356316 DDRGK1Q96HY6 314 aa12.88□□□□□ -0.35
CAPN3-204ENST00000356316 KIAA1683Q9H0B3 1180 aa12.88□□□□□ -0.35
CAPN3-204ENST00000356316 BOLA2Q9H3K6 86 aa12.88□□□□□ -0.35
CAPN3-204ENST00000356316 PAG1Q9NWQ8 432 aa12.88□□□□□ -0.35
CAPN3-204ENST00000356316 XRCC5P13010 732 aaKnown RBP12.87□□□□□ -0.35
CAPN3-204ENST00000356316 ATP5JP18859 108 aa12.87□□□□□ -0.35
CAPN3-204ENST00000356316 NECAB2Q7Z6G3 386 aa12.87□□□□□ -0.35
CAPN3-204ENST00000356316 PLEKHH3Q7Z736 793 aa12.87□□□□□ -0.35
CAPN3-204ENST00000356316 UBE2Q1Q7Z7E8 422 aa12.87□□□□□ -0.35
CAPN3-204ENST00000356316 ANKLE1Q8NAG6 615 aa12.87□□□□□ -0.35
CAPN3-204ENST00000356316 C12orf42Q96LP6 360 aa12.87□□□□□ -0.35
CAPN3-204ENST00000356316 CRISPLD2Q9H0B8 497 aa12.87□□□□□ -0.35
CAPN3-204ENST00000356316 TXNRD2Q9NNW7 524 aa12.87□□□□□ -0.35
CAPN3-204ENST00000356316 RABGAP1Q9Y3P9 1069 aa12.87□□□□□ -0.35
CAPN3-204ENST00000356316 SHMT1P34896 483 aa12.86□□□□□ -0.35
CAPN3-204ENST00000356316 RGS2P41220 211 aa12.86□□□□□ -0.35
CAPN3-204ENST00000356316 Q3C1V9 767 aa12.86□□□□□ -0.35
CAPN3-204ENST00000356316 WDR78Q5VTH9 848 aa12.86□□□□□ -0.35
CAPN3-204ENST00000356316 ZSCAN25Q6NSZ9 544 aa12.86□□□□□ -0.35
CAPN3-204ENST00000356316 CATSPERGQ6ZRH7 1159 aa12.86□□□□□ -0.35
CAPN3-204ENST00000356316 SDR42E1Q8WUS8 393 aa12.86□□□□□ -0.35
CAPN3-204ENST00000356316 PAWRQ96IZ0 340 aaKnown RBP12.86□□□□□ -0.35
CAPN3-204ENST00000356316 LRRCC1Q9C099 1032 aa12.86□□□□□ -0.35
CAPN3-204ENST00000356316 ARMT1Q9H993 441 aa12.86□□□□□ -0.35
CAPN3-204ENST00000356316 ATP8A2Q9NTI2 1148 aa12.86□□□□□ -0.35
CAPN3-204ENST00000356316 SWAP70Q9UH65 585 aa12.86□□□□□ -0.35
CAPN3-204ENST00000356316 NAV1Q8NEY1 1877 aa12.85□□□□□ -0.35
CAPN3-204ENST00000356316 TCRBV5S4A2TA0A5A2 114 aa12.85□□□□□ -0.35
CAPN3-204ENST00000356316 PEX10O60683 326 aa12.85□□□□□ -0.35
CAPN3-204ENST00000356316 ZKSCAN1P17029 563 aaPredicted RBP12.85□□□□□ -0.35
CAPN3-204ENST00000356316 SEPT2Q15019 361 aa12.85□□□□□ -0.35
CAPN3-204ENST00000356316 GPR142Q7Z601 462 aa12.85□□□□□ -0.35
CAPN3-204ENST00000356316 LCORLQ8N3X6 602 aa12.85□□□□□ -0.35
CAPN3-204ENST00000356316 ACER1Q8TDN7 264 aa12.85□□□□□ -0.35
CAPN3-204ENST00000356316 EDC3Q96F86 508 aaKnown RBP12.85□□□□□ -0.35
CAPN3-204ENST00000356316 HAUS7Q99871 368 aa12.85□□□□□ -0.35
CAPN3-204ENST00000356316 PORCNQ9H237 461 aa12.85□□□□□ -0.35
CAPN3-204ENST00000356316 DCP1AQ9NPI6 582 aaPredicted RBP12.85□□□□□ -0.35
CAPN3-204ENST00000356316 HOXC10Q9NYD6 342 aa12.85□□□□□ -0.35
CAPN3-204ENST00000356316 IVNS1ABPQ9Y6Y0 642 aa12.85□□□□□ -0.35
CAPN3-204ENST00000356316 MBD4O95243 580 aa12.84□□□□□ -0.35
CAPN3-204ENST00000356316 PRKAR2AP13861 404 aaKnown RBP12.84□□□□□ -0.35
CAPN3-204ENST00000356316 VCAM1P19320 739 aa12.84□□□□□ -0.35
CAPN3-204ENST00000356316 ADD2P35612 726 aa12.84□□□□□ -0.35
CAPN3-204ENST00000356316 TRIM32Q13049 653 aa12.84□□□□□ -0.35
CAPN3-204ENST00000356316 TMEM179Q6ZVK1 233 aa12.84□□□□□ -0.35
CAPN3-204ENST00000356316 TRIB2Q92519 343 aa12.84□□□□□ -0.35
CAPN3-204ENST00000356316 NBPF3Q9H094 633 aa12.84□□□□□ -0.35
CAPN3-204ENST00000356316 RPAP3Q9H6T3 665 aaPredicted RBP12.84□□□□□ -0.35
CAPN3-204ENST00000356316 SH2D4AQ9H788 454 aa12.84□□□□□ -0.35
CAPN3-204ENST00000356316 PLXNB2O15031 1838 aa12.83□□□□□ -0.35
CAPN3-204ENST00000356316 FXR1P51114 621 aaKnown RBP eCLIP12.83□□□□□ -0.36
CAPN3-204ENST00000356316 GABPAQ06546 454 aa12.83□□□□□ -0.36
CAPN3-204ENST00000356316 COG2Q14746 738 aa12.83□□□□□ -0.36
CAPN3-204ENST00000356316 MORN1Q5T089 497 aa12.83□□□□□ -0.36
CAPN3-204ENST00000356316 GPATCH3Q96I76 525 aa12.83□□□□□ -0.36
CAPN3-204ENST00000356316 TANGO6Q9C0B7 1094 aa12.83□□□□□ -0.36
CAPN3-204ENST00000356316 ARHGEF10LQ9HCE6 1279 aa12.83□□□□□ -0.36
CAPN3-204ENST00000356316 MYH8P13535 1937 aa12.83□□□□□ -0.36
CAPN3-204ENST00000356316 SLC15A5A6NIM6 579 aa12.82□□□□□ -0.36
CAPN3-204ENST00000356316 PRKAB2O43741 272 aa12.82□□□□□ -0.36
CAPN3-204ENST00000356316 CYP2D6P10635 497 aa12.82□□□□□ -0.36
CAPN3-204ENST00000356316 PTPREP23469 700 aa12.82□□□□□ -0.36
CAPN3-204ENST00000356316 GUCY1A2P33402 732 aa12.82□□□□□ -0.36
CAPN3-204ENST00000356316 ATP2B2Q01814 1243 aa12.82□□□□□ -0.36
CAPN3-204ENST00000356316 CACNB2Q08289 660 aaPredicted RBP12.82□□□□□ -0.36
CAPN3-204ENST00000356316 MAP2K5Q13163 448 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms