RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 LMAN1P49257 510 aa11.64□□□□□ -0.55
SYNE1-203ENST00000354674 EVCP57679 992 aa11.64□□□□□ -0.55
SYNE1-203ENST00000354674 INTS4Q96HW7 963 aaKnown RBP11.64□□□□□ -0.55
SYNE1-203ENST00000354674 CNNM2Q9H8M5 875 aa11.64□□□□□ -0.55
SYNE1-203ENST00000354674 PSMD14O00487 310 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 PRELPP51888 382 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 Q6ZUG5 572 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 SH2B1Q9NRF2 756 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-203ENST00000354674 TPCN1Q9ULQ1 816 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 USP17L12C9JPN9 530 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 USP17L21D6R901 530 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 F8W031 263 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-203ENST00000354674 C12orf60Q5U649 245 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 PACS2Q86VP3 889 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 RNF41Q9H4P4 317 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-203ENST00000354674 SCNN1DP51172 638 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 MFSD6Q6ZSS7 791 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 PRPF38AQ8NAV1 312 aaKnown RBP11.63□□□□□ -0.55
SYNE1-203ENST00000354674 AGBL3Q8NEM8 1001 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 TGFBRAP1Q8WUH2 860 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 TCEANC2Q96MN5 208 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 MTA3Q9BTC8 594 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 SRRTQ9BXP5 876 aaKnown RBP11.63□□□□□ -0.55
SYNE1-203ENST00000354674 TRIM5Q9C035 493 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 KRT23Q9C075 422 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 BCCIPQ9P287 314 aaKnown RBP eCLIP11.63□□□□□ -0.55
SYNE1-203ENST00000354674 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.63□□□□□ -0.55
SYNE1-203ENST00000354674 CEP83Q9Y592 693 aa11.63□□□□□ -0.55
SYNE1-203ENST00000354674 FLT1P17948 1338 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 ECM2O94769 699 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-203ENST00000354674 USP5P45974 858 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 NT5C2P49902 561 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 CYB5R4Q7L1T6 521 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 KIAA0825Q8IV33 1275 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 CKAP2LQ8IYA6 745 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 TEX11Q8IYF3 940 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 INCENPQ9NQS7 918 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 SMIM22K7EJ46 135 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 WDHD1O75717 1129 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-203ENST00000354674 LARGE1O95461 756 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 CXCL9Q07325 125 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 TRDNQ13061 729 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 ME3Q16798 604 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 CDC42EP5Q6NZY7 148 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 FOXR1Q6PIV2 292 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 RALYLQ86SE5 291 aaKnown RBP11.62□□□□□ -0.55
SYNE1-203ENST00000354674 SYT17Q9BSW7 474 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 YY1AP1Q9H869 796 aa11.62□□□□□ -0.55
SYNE1-203ENST00000354674 CYP2D7A0A087X1C5 515 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 FZD9O00144 591 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 PRC1O43663 620 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 ORC4O43929 436 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 NPM3O75607 178 aaKnown RBP11.61□□□□□ -0.55
SYNE1-203ENST00000354674 RAD17O75943 681 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 USP17L8P0C7I0 530 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 ST3GAL1Q11201 340 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 MCM9Q9NXL9 1143 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 RRP15Q9Y3B9 282 aaKnown RBP11.61□□□□□ -0.55
SYNE1-203ENST00000354674 DICER1Q9UPY3 1922 aaKnown RBP11.61□□□□□ -0.55
SYNE1-203ENST00000354674 MINDY4BA8MYZ0 360 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 B4E1Z4 1266 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 CCDC172P0C7W6 258 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 RASSF7Q02833 373 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 CWC22Q9HCG8 908 aaKnown RBP11.61□□□□□ -0.55
SYNE1-203ENST00000354674 ZSWIM5Q9P217 1185 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 MYH1P12882 1939 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 EVX2Q03828 476 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 MTMR14Q8NCE2 650 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 IGDCC4Q8TDY8 1250 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 JDP2Q8WYK2 163 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 TMEM87BQ96K49 555 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 USP40Q9NVE5 1235 aa11.61□□□□□ -0.55
SYNE1-203ENST00000354674 CYP2D6P10635 497 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 GUCY2CP25092 1073 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 PLA2G4AP47712 749 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 FILIP1Q7Z7B0 1213 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 MAPKAPK5Q8IW41 473 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 BRF1Q92994 677 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 IDI2Q9BXS1 227 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 LRRC2Q9BYS8 371 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 SH2B2O14492 632 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-203ENST00000354674 TEX35Q5T0J7 233 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 CIAPIN1Q6FI81 312 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 CHST3Q7LGC8 479 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 ZNF274Q96GC6 653 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-203ENST00000354674 DEF6Q9H4E7 631 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 DDX4Q9NQI0 724 aaKnown RBP11.6□□□□□ -0.55
SYNE1-203ENST00000354674 PCDHAC2Q9Y5I4 1007 aa11.6□□□□□ -0.55
SYNE1-203ENST00000354674 SBF1O95248 1867 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 CLCN6P51797 869 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 DHX8Q14562 1220 aaKnown RBP11.59□□□□□ -0.55
SYNE1-203ENST00000354674 TTC31Q49AM3 519 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-203ENST00000354674 CACTINQ8WUQ7 758 aaKnown RBP11.59□□□□□ -0.55
SYNE1-203ENST00000354674 ZBED3Q96IU2 234 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-203ENST00000354674 SUFUQ9UMX1 484 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 IRF6O14896 467 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 PFKFB2O60825 505 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 SLC3A2P08195 630 aaKnown RBP11.59□□□□□ -0.55
SYNE1-203ENST00000354674 LIFRP42702 1097 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 TNIP1Q15025 636 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms