RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 RBM10P98175 930 aaKnown RBP17.3■□□□□ 0.36
TPM3-208ENST00000341485 SART3Q15020 963 aaKnown RBP17.3■□□□□ 0.36
TPM3-208ENST00000341485 SHC4Q6S5L8 630 aa17.3■□□□□ 0.36
TPM3-208ENST00000341485 CERS3Q8IU89 383 aa17.3■□□□□ 0.36
TPM3-208ENST00000341485 SH3RF3Q8TEJ3 882 aaPredicted RBP17.3■□□□□ 0.36
TPM3-208ENST00000341485 MTA3Q9BTC8 594 aa17.3■□□□□ 0.36
TPM3-208ENST00000341485 ANAPC4Q9UJX5 808 aa17.3■□□□□ 0.36
TPM3-208ENST00000341485 HPSEQ9Y251 543 aa17.3■□□□□ 0.36
TPM3-208ENST00000341485 SUGT1Q9Y2Z0 365 aa17.3■□□□□ 0.36
TPM3-208ENST00000341485 SMIM22K7EJ46 135 aa17.29■□□□□ 0.36
TPM3-208ENST00000341485 PPP4CP60510 307 aa17.29■□□□□ 0.36
TPM3-208ENST00000341485 CCDC93Q567U6 631 aa17.29■□□□□ 0.36
TPM3-208ENST00000341485 CTR9Q6PD62 1173 aa17.29■□□□□ 0.36
TPM3-208ENST00000341485 NBPF11Q86T75 865 aa17.29■□□□□ 0.36
TPM3-208ENST00000341485 WASF1Q92558 559 aa17.29■□□□□ 0.36
TPM3-208ENST00000341485 USP17L12C9JPN9 530 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 USP17L21D6R901 530 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 F8W031 263 aaPredicted RBP17.28■□□□□ 0.36
TPM3-208ENST00000341485 ECE2O60344 883 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 GRIPAP1Q4V328 841 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 JMYQ8N9B5 988 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 UPF1Q92900 1129 aaKnown RBP eCLIP17.28■□□□□ 0.367e-32■■■■□ 24.9
TPM3-208ENST00000341485 TIGD1Q96MW7 591 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 BPIFA3Q9BQP9 254 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 ARPP21Q9UBL0 812 aaPredicted RBP17.28■□□□□ 0.36
TPM3-208ENST00000341485 KIF13BQ9NQT8 1826 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 FAM237AA0A1B0GTK4 181 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 ERICH2A1L162 156 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 BIN1O00499 593 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 SYKP43405 635 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 NLRP12P59046 1061 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 AOC3Q16853 763 aa17.28■□□□□ 0.36
TPM3-208ENST00000341485 CYP2D7A0A087X1C5 515 aa17.27■□□□□ 0.36
TPM3-208ENST00000341485 MMP1P03956 469 aa17.27■□□□□ 0.36
TPM3-208ENST00000341485 PLCG2P16885 1265 aa17.27■□□□□ 0.36
TPM3-208ENST00000341485 TGFB2P61812 414 aa17.27■□□□□ 0.36
TPM3-208ENST00000341485 ZRSR1Q15695 479 aaKnown RBP17.27■□□□□ 0.36
TPM3-208ENST00000341485 RESP18Q5W5W9 173 aa17.27■□□□□ 0.36
TPM3-208ENST00000341485 RTKN2Q8IZC4 609 aa17.27■□□□□ 0.36
TPM3-208ENST00000341485 ZNF654Q8IZM8 581 aa17.27■□□□□ 0.36
TPM3-208ENST00000341485 TMTC2Q8N394 836 aa17.27■□□□□ 0.36
TPM3-208ENST00000341485 CLIC6Q96NY7 704 aa17.27■□□□□ 0.36
TPM3-208ENST00000341485 MCM9Q9NXL9 1143 aa17.27■□□□□ 0.36
TPM3-208ENST00000341485 LAMB1P07942 1786 aa17.27■□□□□ 0.35
TPM3-208ENST00000341485 GPR75-ASB3A0A0A6YYF3 556 aa17.27■□□□□ 0.35
TPM3-208ENST00000341485 BTBD18B2RXH4 712 aa17.27■□□□□ 0.35
TPM3-208ENST00000341485 PPIP5K2O43314 1243 aa17.27■□□□□ 0.35
TPM3-208ENST00000341485 KCNA3P22001 575 aa17.27■□□□□ 0.35
TPM3-208ENST00000341485 RCAN1P53805 252 aa17.27■□□□□ 0.35
TPM3-208ENST00000341485 SEC23AQ15436 765 aa17.27■□□□□ 0.35
TPM3-208ENST00000341485 NOSTRINQ8IVI9 506 aa17.27■□□□□ 0.35
TPM3-208ENST00000341485 AMOTL1Q8IY63 956 aa17.27■□□□□ 0.35
TPM3-208ENST00000341485 TRIM22Q8IYM9 498 aa17.27■□□□□ 0.35
TPM3-208ENST00000341485 CRACR2BQ8N4Y2 399 aaPredicted RBP17.27■□□□□ 0.35
TPM3-208ENST00000341485 FAM163AQ96GL9 167 aaPredicted RBP17.27■□□□□ 0.35
TPM3-208ENST00000341485 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.27■□□□□ 0.35
TPM3-208ENST00000341485 KCNJ14Q9UNX9 436 aa17.27■□□□□ 0.35
TPM3-208ENST00000341485 TTF2Q9UNY4 1162 aaKnown RBP17.27■□□□□ 0.35
TPM3-208ENST00000341485 CUTAO60888 179 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 ARID5BQ14865 1188 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 LRRC8AQ8IWT6 810 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 CMTR1Q8N1G2 835 aaKnown RBP17.26■□□□□ 0.35
TPM3-208ENST00000341485 CCDC82Q8N4S0 544 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 CERS5Q8N5B7 392 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 TGFBRAP1Q8WUH2 860 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 NUP133Q8WUM0 1156 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 ESR2Q92731 530 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 UBAC1Q9BSL1 405 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 MXD3Q9BW11 206 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 FAM13BQ9NYF5 915 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 PPP1R1BQ9UD71 204 aaPredicted RBP17.26■□□□□ 0.35
TPM3-208ENST00000341485 GAKO14976 1311 aa17.26■□□□□ 0.35
TPM3-208ENST00000341485 PCP11498 1178 aaKnown RBP17.25■□□□□ 0.35
TPM3-208ENST00000341485 TOB1P50616 345 aaPredicted RBP17.25■□□□□ 0.35
TPM3-208ENST00000341485 SBK1Q52WX2 424 aa17.25■□□□□ 0.35
TPM3-208ENST00000341485 DIS3L2Q8IYB7 885 aaKnown RBP17.25■□□□□ 0.35
TPM3-208ENST00000341485 TEX11Q8IYF3 940 aa17.25■□□□□ 0.35
TPM3-208ENST00000341485 FANCBQ8NB91 859 aa17.25■□□□□ 0.35
TPM3-208ENST00000341485 PIM2Q9P1W9 311 aa17.25■□□□□ 0.35
TPM3-208ENST00000341485 TNKSO95271 1327 aa17.25■□□□□ 0.35
TPM3-208ENST00000341485 SNED1Q8TER0 1413 aa17.25■□□□□ 0.35
TPM3-208ENST00000341485 MYH6P13533 1939 aa17.25■□□□□ 0.35
TPM3-208ENST00000341485 CCDC196A0A1B0GTZ2 297 aa17.25■□□□□ 0.35
TPM3-208ENST00000341485 DEXIO95424 95 aa17.25■□□□□ 0.35
TPM3-208ENST00000341485 GTF2F1P35269 517 aaKnown RBP eCLIP17.25■□□□□ 0.35
TPM3-208ENST00000341485 TUBE1Q9UJT0 475 aa17.25■□□□□ 0.35
TPM3-208ENST00000341485 DAGLAQ9Y4D2 1042 aa17.25■□□□□ 0.35
TPM3-208ENST00000341485 NAV1Q8NEY1 1877 aa17.24■□□□□ 0.35
TPM3-208ENST00000341485 USP17L8P0C7I0 530 aa17.24■□□□□ 0.35
TPM3-208ENST00000341485 NCAPHQ15003 741 aa17.24■□□□□ 0.35
TPM3-208ENST00000341485 SAFBQ15424 915 aaKnown RBP eCLIP17.24■□□□□ 0.35
TPM3-208ENST00000341485 STRIP1Q5VSL9 837 aa17.24■□□□□ 0.35
TPM3-208ENST00000341485 MAPKAPK5Q8IW41 473 aa17.24■□□□□ 0.35
TPM3-208ENST00000341485 KCNQ5Q9NR82 932 aa17.24■□□□□ 0.35
TPM3-208ENST00000341485 USP17L3A6NCW0 530 aa17.24■□□□□ 0.35
TPM3-208ENST00000341485 USP17L4A6NCW7 530 aa17.24■□□□□ 0.35
TPM3-208ENST00000341485 CYP2D6P10635 497 aa17.24■□□□□ 0.35
TPM3-208ENST00000341485 SLC4A8Q2Y0W8 1093 aa17.24■□□□□ 0.35
TPM3-208ENST00000341485 SOGA3Q5TF21 947 aa17.24■□□□□ 0.35
TPM3-208ENST00000341485 USP17L1Q7RTZ2 530 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms