RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 TRAF1Q13077 416 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 SUSD4Q5VX71 490 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 PI16Q6UXB8 463 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 LDHAL6AQ6ZMR3 332 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 GPR108Q9NPR9 543 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 IBSPP21815 317 aaPredicted RBP13.43□□□□□ -0.26
RTN3-203ENST00000341307 SCARF1Q14162 830 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 TBC1D25Q3MII6 688 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 C1QTNF12Q5T7M4 302 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 LARP1BQ659C4 914 aaKnown RBP13.43□□□□□ -0.26
RTN3-203ENST00000341307 TLDC1Q6P9B6 456 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 ZNF34Q8IZ26 560 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 KBTBD3Q8NAB2 608 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 ERCC4Q92889 916 aaPredicted RBP13.43□□□□□ -0.26
RTN3-203ENST00000341307 EHD4Q9H223 541 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 KAT14Q9H8E8 782 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 DDX20Q9UHI6 824 aaKnown RBP13.43□□□□□ -0.26
RTN3-203ENST00000341307 ANKRD36CQ5JPF3 1778 aa13.42□□□□□ -0.26
RTN3-203ENST00000341307 ERVV-1B6SEH8 477 aa13.42□□□□□ -0.26
RTN3-203ENST00000341307 ZKSCAN1P17029 563 aaPredicted RBP13.42□□□□□ -0.26
RTN3-203ENST00000341307 GCKP35557 465 aa13.42□□□□□ -0.26
RTN3-203ENST00000341307 VSNL1P62760 191 aa13.42□□□□□ -0.26
RTN3-203ENST00000341307 SNX1Q13596 522 aa13.42□□□□□ -0.26
RTN3-203ENST00000341307 SRGAP1Q7Z6B7 1085 aa13.42□□□□□ -0.26
RTN3-203ENST00000341307 ZSWIM6Q9HCJ5 1215 aa13.42□□□□□ -0.26
RTN3-203ENST00000341307 MYH14Q7Z406 1995 aaKnown RBP13.42□□□□□ -0.26
RTN3-203ENST00000341307 SNUPNO95149 360 aaKnown RBP13.42□□□□□ -0.26
RTN3-203ENST00000341307 AARSP49588 968 aaKnown RBP eCLIP13.42□□□□□ -0.26
RTN3-203ENST00000341307 IRAK1P51617 712 aa13.42□□□□□ -0.26
RTN3-203ENST00000341307 ACTN3Q08043 901 aaPredicted RBP13.42□□□□□ -0.26
RTN3-203ENST00000341307 METTL24Q5JXM2 366 aa13.42□□□□□ -0.26
RTN3-203ENST00000341307 IGSF22Q8N9C0 903 aa13.42□□□□□ -0.26
RTN3-203ENST00000341307 PPP2R2CQ9Y2T4 447 aa13.42□□□□□ -0.26
RTN3-203ENST00000341307 RIC1Q4ADV7 1423 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 A0A1B0GUA9 196 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 CUTAO60888 179 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 ARMC3Q5W041 872 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 CDCA2Q69YH5 1023 aaPredicted RBP13.41□□□□□ -0.26
RTN3-203ENST00000341307 HELBQ8NG08 1087 aaPredicted RBP13.41□□□□□ -0.26
RTN3-203ENST00000341307 CNNM1Q9NRU3 951 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 ANO10Q9NW15 660 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 RIPOR2Q9Y4F9 1068 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 CYP46A1Q9Y6A2 500 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 POTEB2H3BUK9 544 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 WDHD1O75717 1129 aaPredicted RBP13.41□□□□□ -0.26
RTN3-203ENST00000341307 CAMTA2O94983 1202 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 FAM163BP0C2L3 166 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 PSMD2Q13200 908 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 SLC5A9Q2M3M2 681 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 MCMDC2Q4G0Z9 681 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 TTC39AQ5SRH9 613 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 CEP112Q8N8E3 955 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 SMARCC1Q92922 1105 aaPredicted RBP13.41□□□□□ -0.26
RTN3-203ENST00000341307 KLC4Q9NSK0 619 aa13.41□□□□□ -0.26
RTN3-203ENST00000341307 ATXN2Q99700 1313 aaKnown RBP13.41□□□□□ -0.26
RTN3-203ENST00000341307 A0A0G2JLW4 131 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 SNAP23O00161 211 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 ZSCAN12O43309 604 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 PDE8AO60658 829 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 FCHSD1Q86WN1 690 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 CEP57L1Q8IYX8 460 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 NECAB1Q8N987 351 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 ZBTB10Q96DT7 871 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 MTA1Q13330 715 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 ME3Q16798 604 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 TMEM139Q8IV31 216 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 KLHL23Q8NBE8 558 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 PAIP2Q9BPZ3 127 aaKnown RBP13.4□□□□□ -0.26
RTN3-203ENST00000341307 RABEP2Q9H5N1 569 aa13.4□□□□□ -0.26
RTN3-203ENST00000341307 PUF60Q9UHX1 559 aaKnown RBP13.4□□□□□ -0.26
RTN3-203ENST00000341307 ZC3H4Q9UPT8 1303 aaKnown RBP13.4□□□□□ -0.26
RTN3-203ENST00000341307 GRIN2DO15399 1336 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 GOLGA8FQ08AF8 430 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 GOLGA8DPQ0D2H9 430 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 BCAS4Q8TDM0 211 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 SEC31BQ9NQW1 1179 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 NIP7Q9Y221 180 aaKnown RBP eCLIP13.39□□□□□ -0.27
RTN3-203ENST00000341307 RASSF9O75901 435 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 PECAM1P16284 738 aaPredicted RBP13.39□□□□□ -0.27
RTN3-203ENST00000341307 ZAP70P43403 619 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 RBBP5Q15291 538 aaKnown RBP13.39□□□□□ -0.27
RTN3-203ENST00000341307 FBXW7Q969H0 707 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 TM6SF1Q9BZW5 370 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 TFCP2L1Q9NZI6 479 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 TPCN1Q9ULQ1 816 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 SAMM50Q9Y512 469 aa13.39□□□□□ -0.27
RTN3-203ENST00000341307 CYP21A2P08686 494 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 RIN2Q8WYP3 895 aaPredicted RBP13.38□□□□□ -0.27
RTN3-203ENST00000341307 GOLPH3LQ9H4A5 285 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 SH3TC1Q8TE82 1336 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 M0R2C6 588 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 RAB27AP51159 221 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 SLC15A2Q16348 729 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 SLC27A3Q5K4L6 730 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 CEP85LQ5SZL2 805 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 ANKRD23Q86SG2 305 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 TRIM74Q86UV6 250 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 TRIM73Q86UV7 250 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 FAM228AQ86W67 206 aa13.38□□□□□ -0.27
RTN3-203ENST00000341307 SH2B1Q9NRF2 756 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms