RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 ATP2B2Q01814 1243 aa11.71□□□□□ -0.53
HMGB3-201ENST00000325307 ST3GAL1Q11201 340 aa11.71□□□□□ -0.53
HMGB3-201ENST00000325307 IL17RBQ9NRM6 502 aa11.71□□□□□ -0.53
HMGB3-201ENST00000325307 GLTPD2A6NH11 291 aa11.71□□□□□ -0.54
HMGB3-201ENST00000325307 APOBEC3FQ8IUX4 373 aaKnown RBP11.71□□□□□ -0.54
HMGB3-201ENST00000325307 DDX11Q96FC9 970 aa11.71□□□□□ -0.54
HMGB3-201ENST00000325307 CCDC17Q96LX7 622 aa11.71□□□□□ -0.54
HMGB3-201ENST00000325307 HERC5Q9UII4 1024 aaKnown RBP11.71□□□□□ -0.54
HMGB3-201ENST00000325307 ZC3H4Q9UPT8 1303 aaKnown RBP11.71□□□□□ -0.54
HMGB3-201ENST00000325307 GDF11O95390 407 aa11.71□□□□□ -0.54
HMGB3-201ENST00000325307 GJB2P29033 226 aa11.71□□□□□ -0.54
HMGB3-201ENST00000325307 HIRAP54198 1017 aaPredicted RBP11.71□□□□□ -0.54
HMGB3-201ENST00000325307 CEP95Q96GE4 821 aa11.71□□□□□ -0.54
HMGB3-201ENST00000325307 CIZ1Q9ULV3 898 aaPredicted RBP11.71□□□□□ -0.54
HMGB3-201ENST00000325307 HPS5Q9UPZ3 1129 aa11.71□□□□□ -0.54
HMGB3-201ENST00000325307 CPLX2Q6PUV4 134 aaKnown RBP11.7□□□□□ -0.54
HMGB3-201ENST00000325307 DGKHQ86XP1 1220 aa11.7□□□□□ -0.54
HMGB3-201ENST00000325307 NAP1L5Q96NT1 182 aaPredicted RBP11.7□□□□□ -0.54
HMGB3-201ENST00000325307 COL2A1P02458 1487 aaPredicted RBP11.7□□□□□ -0.54
HMGB3-201ENST00000325307 TCP11L1Q9NUJ3 509 aa11.7□□□□□ -0.54
HMGB3-201ENST00000325307 TAOK2Q9UL54 1235 aa11.7□□□□□ -0.54
HMGB3-201ENST00000325307 JAK2O60674 1132 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 PKP1Q13835 747 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 RTN1Q16799 776 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 ABCB5Q2M3G0 1257 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 EAPPQ56P03 285 aaPredicted RBP11.69□□□□□ -0.54
HMGB3-201ENST00000325307 PRAMEF18Q5VWM3 479 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 CLEC10AQ8IUN9 316 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 FAM184AQ8NB25 1140 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 DCPSQ96C86 337 aaKnown RBP11.69□□□□□ -0.54
HMGB3-201ENST00000325307 CABP5Q9NP86 173 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 EPHX2P34913 555 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 ADD1P35611 737 aaKnown RBP11.69□□□□□ -0.54
HMGB3-201ENST00000325307 RCSD1Q6JBY9 416 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 PNMA1Q8ND90 353 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 L3MBTL3Q96JM7 780 aaPredicted RBP11.69□□□□□ -0.54
HMGB3-201ENST00000325307 PTPDC1A2A3K4 754 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 TMEM47Q9BQJ4 181 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 CLIP2Q9UDT6 1046 aa11.69□□□□□ -0.54
HMGB3-201ENST00000325307 IQCA1LA6NCM1 817 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 RAD21O60216 631 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 SHROOM1Q2M3G4 852 aaPredicted RBP11.68□□□□□ -0.54
HMGB3-201ENST00000325307 FOXD4L5Q5VV16 416 aaPredicted RBP11.68□□□□□ -0.54
HMGB3-201ENST00000325307 TATDN1Q6P1N9 297 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 CCDC82Q8N4S0 544 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 FANCBQ8NB91 859 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 CTCFLQ8NI51 663 aaPredicted RBP11.68□□□□□ -0.54
HMGB3-201ENST00000325307 CNKSR2Q8WXI2 1034 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 FOXD4L4Q8WXT5 416 aaPredicted RBP11.68□□□□□ -0.54
HMGB3-201ENST00000325307 LLPHQ9BRT6 129 aaKnown RBP11.68□□□□□ -0.54
HMGB3-201ENST00000325307 MTMR4Q9NYA4 1195 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 CCDC196A0A1B0GTZ2 297 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 DDAH1O94760 285 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 GH2P01242 217 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 CALM1P0DP23 149 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 CALM2P0DP24 149 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 CALM3P0DP25 149 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 METTL16Q86W50 562 aaKnown RBP11.68□□□□□ -0.54
HMGB3-201ENST00000325307 SULF1Q8IWU6 871 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 CDKL5O76039 1030 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 CDC27P30260 824 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 FOSBP53539 338 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 SEPT2Q15019 361 aa11.68□□□□□ -0.54
HMGB3-201ENST00000325307 NBPF12Q5TAG4 269 aaPredicted RBP11.68□□□□□ -0.54
HMGB3-201ENST00000325307 NSUN7Q8NE18 718 aaKnown RBP11.68□□□□□ -0.54
HMGB3-201ENST00000325307 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.68□□□□□ -0.54
HMGB3-201ENST00000325307 ISY1Q9ULR0 285 aaKnown RBP11.68□□□□□ -0.54
HMGB3-201ENST00000325307 TTLL1O95922 423 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 TOP1P11387 765 aaKnown RBP11.67□□□□□ -0.54
HMGB3-201ENST00000325307 HMGN5P82970 282 aaKnown RBP11.67□□□□□ -0.54
HMGB3-201ENST00000325307 TMEM179Q6ZVK1 233 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 LRRC47Q8N1G4 583 aaKnown RBP11.67□□□□□ -0.54
HMGB3-201ENST00000325307 TEPSINQ96N21 525 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 KIF3AQ9Y496 699 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 PPP4R3BQ5MIZ7 849 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 KANSL2Q9H9L4 492 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 PLIN4Q96Q06 1357 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 CTDNEP1O95476 244 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 NUCB2P80303 420 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 ICA1Q05084 483 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 TROAPQ12815 778 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 LARP1BQ659C4 914 aaKnown RBP11.67□□□□□ -0.54
HMGB3-201ENST00000325307 USP50Q70EL3 339 aaPredicted RBP11.67□□□□□ -0.54
HMGB3-201ENST00000325307 CMTR1Q8N1G2 835 aaKnown RBP11.67□□□□□ -0.54
HMGB3-201ENST00000325307 ANKS1AQ92625 1134 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 HOOK2Q96ED9 719 aa11.67□□□□□ -0.54
HMGB3-201ENST00000325307 VPS37CA5D8V6 355 aaPredicted RBP11.66□□□□□ -0.54
HMGB3-201ENST00000325307 TBC1D12O60347 775 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 KIF5BP33176 963 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 RCAN1P53805 252 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 DCAF15Q66K64 600 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 CLEC17AQ6ZS10 378 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 KRT26Q7Z3Y9 468 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 PHKBQ93100 1093 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 ORC3Q9UBD5 711 aaPredicted RBP11.66□□□□□ -0.54
HMGB3-201ENST00000325307 CLEC11AQ9Y240 323 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 MYH8P13535 1937 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 RRP1BQ14684 758 aaKnown RBP11.66□□□□□ -0.54
HMGB3-201ENST00000325307 SLC26A6Q9BXS9 759 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 TAF1DQ9H5J8 278 aaPredicted RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms