RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 STX8Q9UNK0 236 aa21.39■■□□□ 1.01
USP39-201ENST00000323701 KCNJ14Q9UNX9 436 aa21.39■■□□□ 1.01
USP39-201ENST00000323701 CLEC10AQ8IUN9 316 aa21.38■■□□□ 1.01
USP39-201ENST00000323701 STAG2Q8N3U4 1231 aa21.38■■□□□ 1.01
USP39-201ENST00000323701 NEDD1Q8NHV4 660 aa21.38■■□□□ 1.01
USP39-201ENST00000323701 SCAND2PQ9GZW5 306 aaPredicted RBP21.38■■□□□ 1.01
USP39-201ENST00000323701 DNAJC18Q9H819 358 aa21.38■■□□□ 1.01
USP39-201ENST00000323701 ELP1O95163 1332 aa21.38■■□□□ 1.01
USP39-201ENST00000323701 FAM196BA6NMK8 535 aa21.38■■□□□ 1.01
USP39-201ENST00000323701 VEGFAP15692 232 aaPredicted RBP21.38■■□□□ 1.01
USP39-201ENST00000323701 CEP95Q96GE4 821 aa21.38■■□□□ 1.01
USP39-201ENST00000323701 KAT14Q9H8E8 782 aa21.38■■□□□ 1.01
USP39-201ENST00000323701 MTMR7Q9Y216 660 aa21.38■■□□□ 1.01
USP39-201ENST00000323701 V9GY48 417 aaPredicted RBP21.38■■□□□ 1.01
USP39-201ENST00000323701 SIPA1L1O43166 1804 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 CALM1P0DP23 149 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 CALM2P0DP24 149 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 CALM3P0DP25 149 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 AKR1B1P15121 316 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 SHMT1P34896 483 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 TRIM22Q8IYM9 498 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 NLGN2Q8NFZ4 835 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 SERPINB13Q9UIV8 391 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 FER1L6Q2WGJ9 1857 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 DEXIO95424 95 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 SLC35G1Q2M3R5 365 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 IDI2Q9BXS1 227 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 ZNF287Q9HBT7 754 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 BCS1LQ9Y276 419 aa21.37■■□□□ 1.01
USP39-201ENST00000323701 CNTNAP5Q8WYK1 1306 aa21.36■■□□□ 1.01
USP39-201ENST00000323701 CXCL9Q07325 125 aa21.36■■□□□ 1.01
USP39-201ENST00000323701 PPP2R5BQ15173 497 aa21.36■■□□□ 1.01
USP39-201ENST00000323701 SHROOM1Q2M3G4 852 aaPredicted RBP21.36■■□□□ 1.01
USP39-201ENST00000323701 RNF26Q9BY78 433 aaPredicted RBP21.36■■□□□ 1.01
USP39-201ENST00000323701 ZNRF3Q9ULT6 936 aa21.36■■□□□ 1.01
USP39-201ENST00000323701 PRELPP51888 382 aa21.36■■□□□ 1.01
USP39-201ENST00000323701 SOGA3Q5TF21 947 aa21.36■■□□□ 1.01
USP39-201ENST00000323701 CTCFLQ8NI51 663 aaPredicted RBP21.36■■□□□ 1.01
USP39-201ENST00000323701 RBM28Q9NW13 759 aaKnown RBP21.36■■□□□ 1.01
USP39-201ENST00000323701 CLIC4Q9Y696 253 aa21.36■■□□□ 1.01
USP39-201ENST00000323701 MYH6P13533 1939 aa21.35■■□□□ 1.01
USP39-201ENST00000323701 CSPP1Q1MSJ5 1256 aa21.35■■□□□ 1.01
USP39-201ENST00000323701 MYSM1Q5VVJ2 828 aa21.35■■□□□ 1.01
USP39-201ENST00000323701 NIM1KQ8IY84 436 aa21.35■■□□□ 1.01
USP39-201ENST00000323701 PIBF1Q8WXW3 757 aa21.35■■□□□ 1.01
USP39-201ENST00000323701 TAOK3Q9H2K8 898 aa21.35■■□□□ 1.01
USP39-201ENST00000323701 MAD2L2Q9UI95 211 aa21.35■■□□□ 1.01
USP39-201ENST00000323701 CD2APQ9Y5K6 639 aa21.35■■□□□ 1.01
USP39-201ENST00000323701 SHTN1A0MZ66 631 aa21.34■■□□□ 1.01
USP39-201ENST00000323701 SYCE3A1L190 88 aa21.34■■□□□ 1.01
USP39-201ENST00000323701 LIG1P18858 919 aa21.34■■□□□ 1.01
USP39-201ENST00000323701 RCOR1Q9UKL0 485 aa21.34■■□□□ 1.01
USP39-201ENST00000323701 CFAP45Q9UL16 551 aa21.34■■□□□ 1.01
USP39-201ENST00000323701 BTBD18B2RXH4 712 aa21.34■■□□□ 1.01
USP39-201ENST00000323701 PRPF3O43395 683 aaKnown RBP21.34■■□□□ 1.01
USP39-201ENST00000323701 NT5C2P49902 561 aa21.34■■□□□ 1.01
USP39-201ENST00000323701 OXER1Q8TDS5 423 aa21.34■■□□□ 1.01
USP39-201ENST00000323701 VPS54Q9P1Q0 977 aa21.34■■□□□ 1.01
USP39-201ENST00000323701 SPDYE2BA6NHP3 402 aa21.33■■□□□ 1.01
USP39-201ENST00000323701 MMP1P03956 469 aa21.33■■□□□ 1.01
USP39-201ENST00000323701 SPDYE6P0CI01 402 aa21.33■■□□□ 1.01
USP39-201ENST00000323701 GOLGA8HP0CJ92 632 aa21.33■■□□□ 1.01
USP39-201ENST00000323701 U2AF2P26368 475 aaKnown RBP eCLIP21.33■■□□□ 1.01
USP39-201ENST00000323701 NOVP48745 357 aa21.33■■□□□ 1.01
USP39-201ENST00000323701 EIF6P56537 245 aaKnown RBP21.33■■□□□ 1.01
USP39-201ENST00000323701 BRAPQ7Z569 592 aa21.33■■□□□ 1.01
USP39-201ENST00000323701 CPVLQ9H3G5 476 aa21.33■■□□□ 1.01
USP39-201ENST00000323701 CLRN2A0PK11 232 aa21.33■■□□□ 1
USP39-201ENST00000323701 GOLGA6L3A6NEY3 463 aa21.33■■□□□ 1
USP39-201ENST00000323701 ZNF445P59923 1031 aa21.33■■□□□ 1
USP39-201ENST00000323701 GRM4Q14833 912 aa21.33■■□□□ 1
USP39-201ENST00000323701 RGS22Q8NE09 1264 aa21.33■■□□□ 1
USP39-201ENST00000323701 WASF1Q92558 559 aa21.33■■□□□ 1
USP39-201ENST00000323701 VPS33BQ9H267 617 aa21.33■■□□□ 1
USP39-201ENST00000323701 IGKV6D-41A0A0C4DH26 115 aa21.32■■□□□ 1
USP39-201ENST00000323701 RASSF7Q02833 373 aa21.32■■□□□ 1
USP39-201ENST00000323701 NR5A1Q13285 461 aa21.32■■□□□ 1
USP39-201ENST00000323701 TRIM29Q14134 588 aa21.32■■□□□ 1
USP39-201ENST00000323701 ZNF396Q96N95 335 aaPredicted RBP21.32■■□□□ 1
USP39-201ENST00000323701 RTN4Q9NQC3 1192 aaKnown RBP21.32■■□□□ 1
USP39-201ENST00000323701 MTMR4Q9NYA4 1195 aa21.32■■□□□ 1
USP39-201ENST00000323701 MYH8P13535 1937 aa21.32■■□□□ 1
USP39-201ENST00000323701 PLIN4Q96Q06 1357 aa21.32■■□□□ 1
USP39-201ENST00000323701 CYTH3O43739 400 aa21.31■■□□□ 1
USP39-201ENST00000323701 ZSCAN29Q8IWY8 852 aaPredicted RBP21.31■■□□□ 1
USP39-201ENST00000323701 DIS3L2Q8IYB7 885 aaKnown RBP21.31■■□□□ 1
USP39-201ENST00000323701 RTEL1Q9NZ71 1219 aa21.31■■□□□ 1
USP39-201ENST00000323701 MYO3BQ8WXR4 1341 aa21.31■■□□□ 1
USP39-201ENST00000323701 ADAMTS3O15072 1205 aa21.31■■□□□ 1
USP39-201ENST00000323701 HLA-DOAP06340 250 aa21.31■■□□□ 1
USP39-201ENST00000323701 CCDC178Q5BJE1 867 aa21.31■■□□□ 1
USP39-201ENST00000323701 EHD4Q9H223 541 aa21.31■■□□□ 1
USP39-201ENST00000323701 AKAP17AQ02040 695 aaKnown RBP21.3■■□□□ 1
USP39-201ENST00000323701 LINC00301Q8NCQ3 95 aa21.3■■□□□ 1
USP39-201ENST00000323701 SWAP70Q9UH65 585 aa21.3■■□□□ 1
USP39-201ENST00000323701 PALM3A6NDB9 673 aaPredicted RBP21.3■■□□□ 1
USP39-201ENST00000323701 TCP10L2B9ZVM9 353 aa21.3■■□□□ 1
USP39-201ENST00000323701 NPY5RQ15761 445 aa21.3■■□□□ 1
USP39-201ENST00000323701 USP17L2Q6R6M4 530 aa21.3■■□□□ 1
USP39-201ENST00000323701 LRRC47Q8N1G4 583 aaKnown RBP21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms