RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 SDR42E1Q8WUS8 393 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 ZSCAN10Q96SZ4 725 aaPredicted RBP16.54■□□□□ 0.24
TCOF1-201ENST00000323668 JAG2Q9Y219 1238 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 ARHGEF28Q8N1W1 1705 aaKnown RBP16.54■□□□□ 0.24
TCOF1-201ENST00000323668 TSPOAP1O95153 1857 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 MMP1P03956 469 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 BCAMP50895 628 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 RABL6Q3YEC7 729 aaPredicted RBP16.54■□□□□ 0.24
TCOF1-201ENST00000323668 ANKRD2Q9GZV1 360 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 SHPRHQ149N8 1683 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 KCNJ18B7U540 433 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 USP17L12C9JPN9 530 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 USP17L21D6R901 530 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 LDHBP07195 334 aaKnown RBP16.54■□□□□ 0.24
TCOF1-201ENST00000323668 KCNJ12Q14500 433 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 FUCA2Q9BTY2 467 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 NR5A1Q13285 461 aa16.53■□□□□ 0.24
TCOF1-201ENST00000323668 MORC3Q14149 939 aa16.53■□□□□ 0.24
TCOF1-201ENST00000323668 SRGAP1Q7Z6B7 1085 aa16.53■□□□□ 0.24
TCOF1-201ENST00000323668 SYMPKQ92797 1274 aaKnown RBP16.53■□□□□ 0.24
TCOF1-201ENST00000323668 HIBADHP31937 336 aaKnown RBP16.53■□□□□ 0.24
TCOF1-201ENST00000323668 PTGDRQ13258 359 aa16.53■□□□□ 0.24
TCOF1-201ENST00000323668 PRPF4BQ13523 1007 aaKnown RBP16.53■□□□□ 0.24
TCOF1-201ENST00000323668 CNNM4Q6P4Q7 775 aa16.53■□□□□ 0.24
TCOF1-201ENST00000323668 RNF26Q9BY78 433 aaPredicted RBP16.53■□□□□ 0.24
TCOF1-201ENST00000323668 SAR1BQ9Y6B6 198 aa16.53■□□□□ 0.24
TCOF1-201ENST00000323668 TPTE2Q6XPS3 522 aa16.53■□□□□ 0.24
TCOF1-201ENST00000323668 AATFQ9NY61 560 aaKnown RBP eCLIP16.53■□□□□ 0.24
TCOF1-201ENST00000323668 SEC31AO94979 1220 aaKnown RBP16.53■□□□□ 0.24
TCOF1-201ENST00000323668 CASP14P31944 242 aa16.53■□□□□ 0.24
TCOF1-201ENST00000323668 GOPCQ9HD26 462 aa16.53■□□□□ 0.24
TCOF1-201ENST00000323668 CEMIPQ8WUJ3 1361 aa16.52■□□□□ 0.24
TCOF1-201ENST00000323668 TNNI2P48788 182 aa16.52■□□□□ 0.24
TCOF1-201ENST00000323668 GRAMD1CQ8IYS0 662 aa16.52■□□□□ 0.24
TCOF1-201ENST00000323668 SECISBP2LQ93073 1101 aaKnown RBP16.52■□□□□ 0.24
TCOF1-201ENST00000323668 SELENOOQ9BVL4 669 aa16.52■□□□□ 0.24
TCOF1-201ENST00000323668 SAMSN1Q9NSI8 373 aaKnown RBP16.52■□□□□ 0.24
TCOF1-201ENST00000323668 H7C1D1 291 aa16.52■□□□□ 0.24
TCOF1-201ENST00000323668 TERF2Q15554 542 aa16.52■□□□□ 0.24
TCOF1-201ENST00000323668 KMT5BQ4FZB7 885 aa16.52■□□□□ 0.24
TCOF1-201ENST00000323668 DNAJC21Q5F1R6 531 aaKnown RBP16.52■□□□□ 0.24
TCOF1-201ENST00000323668 NYXQ9GZU5 481 aa16.52■□□□□ 0.24
TCOF1-201ENST00000323668 GTPBP6O43824 516 aaPredicted RBP16.52■□□□□ 0.23
TCOF1-201ENST00000323668 CHGBP05060 677 aa16.52■□□□□ 0.23
TCOF1-201ENST00000323668 SLFN14P0C7P3 912 aa16.52■□□□□ 0.23
TCOF1-201ENST00000323668 MB21D2Q8IYB1 491 aaPredicted RBP16.52■□□□□ 0.23
TCOF1-201ENST00000323668 RPGRIP1Q96KN7 1286 aa16.52■□□□□ 0.23
TCOF1-201ENST00000323668 CCDC113Q9H0I3 377 aa16.52■□□□□ 0.23
TCOF1-201ENST00000323668 HAUS4Q9H6D7 363 aa16.52■□□□□ 0.23
TCOF1-201ENST00000323668 NBPF14Q5TI25 921 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 RESP18Q5W5W9 173 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 IFT81Q8WYA0 676 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 ASAP1Q9ULH1 1129 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 MROH1Q8NDA8 1641 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 PARP1P09874 1014 aaKnown RBP16.51■□□□□ 0.23
TCOF1-201ENST00000323668 PNMA6AP0CW24 399 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-201ENST00000323668 ERMNQ8TAM6 284 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 EPN1Q9Y6I3 576 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-201ENST00000323668 FAM47AQ5JRC9 791 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 CFAP58Q5T655 872 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 ATRIPQ8WXE1 791 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 CCDC87Q9NVE4 849 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 SRPRBQ9Y5M8 271 aaKnown RBP16.51■□□□□ 0.23
TCOF1-201ENST00000323668 ZNF609O15014 1411 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 LONRF2Q1L5Z9 754 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 MICALL1Q8N3F8 863 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 CUL5Q93034 780 aa16.51■□□□□ 0.23
TCOF1-201ENST00000323668 TECPR2O15040 1411 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 TRAF5O00463 557 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 ARID4AP29374 1257 aaPredicted RBP16.5■□□□□ 0.23
TCOF1-201ENST00000323668 DYDC1Q8WWB3 177 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 ANKRD7Q92527 254 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 CCDC151A5D8V7 595 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 MCAMP43121 646 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 MNAT1P51948 309 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 RBL2Q08999 1139 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 PCDHB6Q9Y5E3 794 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 CTIFO43310 598 aaKnown RBP16.5■□□□□ 0.23
TCOF1-201ENST00000323668 ZEB2O60315 1214 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 PLCG2P16885 1265 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 MAGEA1P43355 309 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 DNM2P50570 870 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 TFAP4Q01664 338 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 PIH1D3Q9NQM4 214 aaKnown RBP16.5■□□□□ 0.23
TCOF1-201ENST00000323668 WDR19Q8NEZ3 1342 aa16.5■□□□□ 0.23
TCOF1-201ENST00000323668 CCNT1O60563 726 aaKnown RBP16.49■□□□□ 0.23
TCOF1-201ENST00000323668 TBCAO75347 108 aaKnown RBP16.49■□□□□ 0.23
TCOF1-201ENST00000323668 HLA-DOAP06340 250 aa16.49■□□□□ 0.23
TCOF1-201ENST00000323668 SCG2P13521 617 aa16.49■□□□□ 0.23
TCOF1-201ENST00000323668 CETN1Q12798 172 aa16.49■□□□□ 0.23
TCOF1-201ENST00000323668 NONOQ15233 471 aaKnown RBP eCLIP16.49■□□□□ 0.23
TCOF1-201ENST00000323668 ZNF804AQ7Z570 1209 aa16.49■□□□□ 0.23
TCOF1-201ENST00000323668 SLC35F6Q8N357 371 aa16.49■□□□□ 0.23
TCOF1-201ENST00000323668 STRBPQ96SI9 672 aaKnown RBP16.49■□□□□ 0.23
TCOF1-201ENST00000323668 COPB1P53618 953 aaKnown RBP16.49■□□□□ 0.23
TCOF1-201ENST00000323668 CCDC84Q86UT8 332 aaPredicted RBP16.49■□□□□ 0.23
TCOF1-201ENST00000323668 NLRP10Q86W26 655 aa16.49■□□□□ 0.23
TCOF1-201ENST00000323668 BLIDQ8IZY5 108 aa16.49■□□□□ 0.23
TCOF1-201ENST00000323668 PARD6BQ9BYG5 372 aa16.49■□□□□ 0.23
TCOF1-201ENST00000323668 MORC2Q9Y6X9 1032 aaPredicted RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms