RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 ANKS1AQ92625 1134 aa32.11■■■□□ 2.73
CTDNEP1-201ENST00000318988 GNL3Q9BVP2 549 aaKnown RBP eCLIP32.11■■■□□ 2.73
CTDNEP1-201ENST00000318988 KANSL2Q9H9L4 492 aa32.11■■■□□ 2.73
CTDNEP1-201ENST00000318988 NMRK2Q9NPI5 230 aa32.11■■■□□ 2.73
CTDNEP1-201ENST00000318988 MTMR4Q9NYA4 1195 aa32.11■■■□□ 2.73
CTDNEP1-201ENST00000318988 GH2P01242 217 aa32.1■■■□□ 2.73
CTDNEP1-201ENST00000318988 PFKFB2O60825 505 aa32.1■■■□□ 2.73
CTDNEP1-201ENST00000318988 TTLL1O95922 423 aa32.1■■■□□ 2.73
CTDNEP1-201ENST00000318988 CAP2P40123 477 aa32.1■■■□□ 2.73
CTDNEP1-201ENST00000318988 RAB3GAP1Q15042 981 aa32.1■■■□□ 2.73
CTDNEP1-201ENST00000318988 LDHDQ86WU2 507 aa32.1■■■□□ 2.73
CTDNEP1-201ENST00000318988 ZNF654Q8IZM8 581 aa32.1■■■□□ 2.73
CTDNEP1-201ENST00000318988 NECAB1Q8N987 351 aa32.1■■■□□ 2.73
CTDNEP1-201ENST00000318988 IGKV6D-41A0A0C4DH26 115 aa32.09■■■□□ 2.73
CTDNEP1-201ENST00000318988 RCSD1Q6JBY9 416 aa32.09■■■□□ 2.73
CTDNEP1-201ENST00000318988 CCDC83Q8IWF9 413 aa32.09■■■□□ 2.73
CTDNEP1-201ENST00000318988 SPRYD3Q8NCJ5 442 aa32.09■■■□□ 2.73
CTDNEP1-201ENST00000318988 GLIS2Q9BZE0 524 aaPredicted RBP32.09■■■□□ 2.73
CTDNEP1-201ENST00000318988 TOP1P11387 765 aaKnown RBP32.08■■■□□ 2.73
CTDNEP1-201ENST00000318988 METAP2P50579 478 aaKnown RBP eCLIP32.08■■■□□ 2.734e-6■□□□□ 8.6
CTDNEP1-201ENST00000318988 ATP2B2Q01814 1243 aa32.08■■■□□ 2.73
CTDNEP1-201ENST00000318988 CUL4AQ13619 759 aa32.08■■■□□ 2.73
CTDNEP1-201ENST00000318988 RRP1BQ14684 758 aaKnown RBP32.08■■■□□ 2.73
CTDNEP1-201ENST00000318988 SEPT2Q15019 361 aa32.08■■■□□ 2.73
CTDNEP1-201ENST00000318988 MICU3Q86XE3 530 aa32.08■■■□□ 2.73
CTDNEP1-201ENST00000318988 PHF20L1A8MW92 1017 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 POTEIP0CG38 1075 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 POTEJP0CG39 1038 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 CALM1P0DP23 149 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 CALM2P0DP24 149 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 CALM3P0DP25 149 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 CCT2P78371 535 aaKnown RBP32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 NUP133Q8WUM0 1156 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 GTF3C6Q969F1 213 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 CDCA5Q96FF9 252 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 TMEM47Q9BQJ4 181 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 CLIP2Q9UDT6 1046 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 ZBTB21Q9ULJ3 1066 aa32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 ZSCAN21Q9Y5A6 473 aaPredicted RBP32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 POLR2AP24928 1970 aaKnown RBP32.07■■■□□ 2.72
CTDNEP1-201ENST00000318988 GOLGA8AA7E2F4 631 aa32.06■■■□□ 2.72
CTDNEP1-201ENST00000318988 DHX16O60231 1041 aaKnown RBP32.06■■■□□ 2.72
CTDNEP1-201ENST00000318988 PPP1R12BO60237 982 aaPredicted RBP32.06■■■□□ 2.72
CTDNEP1-201ENST00000318988 CTNND1O60716 968 aaKnown RBP32.06■■■□□ 2.72
CTDNEP1-201ENST00000318988 DDAH1O94760 285 aa32.06■■■□□ 2.72
CTDNEP1-201ENST00000318988 ASNSP08243 561 aa32.06■■■□□ 2.72
CTDNEP1-201ENST00000318988 RCAN1P53805 252 aa32.06■■■□□ 2.72
CTDNEP1-201ENST00000318988 ICA1Q05084 483 aa32.06■■■□□ 2.72
CTDNEP1-201ENST00000318988 RAB11FIP4Q86YS3 637 aa32.06■■■□□ 2.72
CTDNEP1-201ENST00000318988 PNMA1Q8ND90 353 aa32.06■■■□□ 2.72
CTDNEP1-201ENST00000318988 GINM1Q9NU53 330 aa32.06■■■□□ 2.72
CTDNEP1-201ENST00000318988 MAP1SQ66K74 1059 aaPredicted RBP32.05■■■□□ 2.72
CTDNEP1-201ENST00000318988 WRNIP1Q96S55 665 aa32.05■■■□□ 2.72
CTDNEP1-201ENST00000318988 MYL10Q9BUA6 226 aa32.05■■■□□ 2.72
CTDNEP1-201ENST00000318988 FOXD4L1Q9NU39 408 aa32.05■■■□□ 2.72
CTDNEP1-201ENST00000318988 NOVP48745 357 aa32.05■■■□□ 2.72
CTDNEP1-201ENST00000318988 SHROOM1Q2M3G4 852 aaPredicted RBP32.05■■■□□ 2.72
CTDNEP1-201ENST00000318988 INTS4Q96HW7 963 aaKnown RBP32.05■■■□□ 2.72
CTDNEP1-201ENST00000318988 NYAP2Q9P242 653 aa32.05■■■□□ 2.72
CTDNEP1-201ENST00000318988 SCRN1Q12765 414 aa32.04■■■□□ 2.72
CTDNEP1-201ENST00000318988 PRKG1Q13976 671 aa32.04■■■□□ 2.72
CTDNEP1-201ENST00000318988 DLK2Q6UY11 383 aa32.04■■■□□ 2.72
CTDNEP1-201ENST00000318988 CLEC10AQ8IUN9 316 aa32.04■■■□□ 2.72
CTDNEP1-201ENST00000318988 ZNF112Q9UJU3 913 aa32.04■■■□□ 2.72
CTDNEP1-201ENST00000318988 HPS5Q9UPZ3 1129 aa32.04■■■□□ 2.72
CTDNEP1-201ENST00000318988 CPLX1O14810 134 aa32.03■■■□□ 2.72
CTDNEP1-201ENST00000318988 RXRAP19793 462 aa32.03■■■□□ 2.72
CTDNEP1-201ENST00000318988 GUCY1A2P33402 732 aa32.03■■■□□ 2.72
CTDNEP1-201ENST00000318988 JAG1P78504 1218 aa32.03■■■□□ 2.72
CTDNEP1-201ENST00000318988 CCDC144CPQ8IYA2 1237 aa32.03■■■□□ 2.72
CTDNEP1-201ENST00000318988 CCDC196A0A1B0GTZ2 297 aa32.02■■■□□ 2.72
CTDNEP1-201ENST00000318988 EEF2P13639 858 aaKnown RBP32.02■■■□□ 2.72
CTDNEP1-201ENST00000318988 RTN1Q16799 776 aa32.02■■■□□ 2.72
CTDNEP1-201ENST00000318988 CPLX2Q6PUV4 134 aaKnown RBP32.02■■■□□ 2.72
CTDNEP1-201ENST00000318988 NCOA5Q9HCD5 579 aaKnown RBP32.02■■■□□ 2.72
CTDNEP1-201ENST00000318988 ARHGEF10LQ9HCE6 1279 aa32.02■■■□□ 2.72
CTDNEP1-201ENST00000318988 SSC5DA1L4H1 1573 aa32.01■■■□□ 2.72
CTDNEP1-201ENST00000318988 PPP2R5BQ15173 497 aa32.01■■■□□ 2.72
CTDNEP1-201ENST00000318988 FANCBQ8NB91 859 aa32.01■■■□□ 2.72
CTDNEP1-201ENST00000318988 CTCFLQ8NI51 663 aaPredicted RBP32.01■■■□□ 2.72
CTDNEP1-201ENST00000318988 KLRG1Q96E93 195 aa32.01■■■□□ 2.72
CTDNEP1-201ENST00000318988 GPBP1L1Q9HC44 474 aaPredicted RBP32.01■■■□□ 2.72
CTDNEP1-201ENST00000318988 PICK1Q9NRD5 415 aa32.01■■■□□ 2.72
CTDNEP1-201ENST00000318988 INPP5BP32019 993 aa32■■■□□ 2.71
CTDNEP1-201ENST00000318988 IREB2P48200 963 aaKnown RBP32■■■□□ 2.71
CTDNEP1-201ENST00000318988 TTLL12Q14166 644 aaPredicted RBP32■■■□□ 2.71
CTDNEP1-201ENST00000318988 LRRC47Q8N1G4 583 aaKnown RBP32■■■□□ 2.71
CTDNEP1-201ENST00000318988 MTMR7Q9Y216 660 aa32■■■□□ 2.71
CTDNEP1-201ENST00000318988 USP2O75604 605 aaPredicted RBP32■■■□□ 2.71
CTDNEP1-201ENST00000318988 KIF5BP33176 963 aa32■■■□□ 2.71
CTDNEP1-201ENST00000318988 TROAPQ12815 778 aa32■■■□□ 2.71
CTDNEP1-201ENST00000318988 SCYL3Q8IZE3 742 aa32■■■□□ 2.71
CTDNEP1-201ENST00000318988 SMC3Q9UQE7 1217 aa32■■■□□ 2.71
CTDNEP1-201ENST00000318988 MKL1Q969V6 931 aa31.99■■■□□ 2.71
CTDNEP1-201ENST00000318988 LLPHQ9BRT6 129 aaKnown RBP31.99■■■□□ 2.71
CTDNEP1-201ENST00000318988 RBM28Q9NW13 759 aaKnown RBP31.99■■■□□ 2.71
CTDNEP1-201ENST00000318988 FZD1Q9UP38 647 aa31.99■■■□□ 2.71
CTDNEP1-201ENST00000318988 GREB1LQ9C091 1923 aaPredicted RBP31.99■■■□□ 2.71
CTDNEP1-201ENST00000318988 CDKL5O76039 1030 aa31.98■■■□□ 2.71
CTDNEP1-201ENST00000318988 ST3GAL1Q11201 340 aa31.98■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms