RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MROH2BQ7Z745 1585 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 EXOC5O00471 708 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 COPB1P53618 953 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 NLRP14Q86W24 1093 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 OTULINQ96BN8 352 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 ZWILCHQ9H900 591 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 GMEB1Q9Y692 573 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 HDGFL2Q7Z4V5 671 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 MCF2L2Q86YR7 1114 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 TUFT1Q9NNX1 390 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 TBC1D2BQ9UPU7 963 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 AREL1O15033 823 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 AKR1B10O60218 316 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 RASSF9O75901 435 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 ZKSCAN8Q15776 578 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 DDI2Q5TDH0 399 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 ABHD8Q96I13 439 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 TINF2Q9BSI4 451 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 NVLO15381 856 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 EVI5O60447 810 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 RFX1P22670 979 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 FAM212AQ96EL1 285 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 KLHL11Q9NVR0 708 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 WDR91A4D1P6 747 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 CDC45O75419 566 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 GSTA1P08263 222 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 GSTA2P09210 222 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 MPP2Q14168 576 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 TRIM25Q14258 630 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 CKAP2LQ8IYA6 745 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 CNDP1Q96KN2 507 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 NOP53Q9NZM5 478 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 ZKSCAN5Q9Y2L8 839 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 ATP6V0A2Q9Y487 856 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 SPDYE16A6NNV3 312 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 ADCY3O60266 1144 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 HSD3B1P14060 373 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 TBRG1Q3YBR2 411 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 SPDYE2Q495Y8 402 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 CCDC117Q8IWD4 279 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 PPP1R14AQ96A00 147 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 CIDECQ96AQ7 238 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 PHF21AQ96BD5 680 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 HOOK2Q96ED9 719 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 DTNBP1Q96EV8 351 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 QKIQ96PU8 341 aaKnown RBP eCLIP8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 SMAD5Q99717 465 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 PLEKHA5Q9HAU0 1116 aa8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 U3KPZ7 1027 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-201ENST00000313860 LOC102724159A0A0B4J2E5 919 aa8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 TPP2P29144 1249 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 STX3Q13277 289 aa8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 PWP2Q15269 919 aaKnown RBP8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 PPARGC1AQ9UBK2 798 aaKnown RBP8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 BAZ1AQ9NRL2 1556 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 SCRN3Q0VDG4 424 aa8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 CNGA2Q16280 664 aa8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 ZNF568Q3ZCX4 644 aa8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 BTNL9Q6UXG8 535 aa8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 ATP11CQ8NB49 1132 aa8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 GOLGA5Q8TBA6 731 aa8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 SCAND2PQ9GZW5 306 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 ANO10Q9NW15 660 aa8.4□□□□□ -1.07
LIMCH1-201ENST00000313860 RNASE9P60153 205 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 IRX1P78414 480 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 LMBRD2Q68DH5 695 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 SULT1C3Q6IMI6 304 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 SRGAP1Q7Z6B7 1085 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 FSIP1Q8NA03 581 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 APPL1Q9UKG1 709 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 FCHO2Q0JRZ9 810 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 RCN2Q14257 317 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 SPATA1Q5VX52 437 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 PGBD2Q6P3X8 592 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 RNF207Q6ZRF8 634 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 RETREG2Q8NC44 543 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 LSG1Q9H089 658 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 CHCHD3Q9NX63 227 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 WDR33Q9C0J8 1336 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 XPOTO43592 962 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 BUB1O43683 1085 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 GRIN1Q05586 938 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 AAMPQ13685 434 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 AKNAD1Q5T1N1 836 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 CASC4Q6P4E1 433 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 ZSCAN29Q8IWY8 852 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 TRMT44Q8IYL2 757 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 ENOX1Q8TC92 643 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 SYMPKQ92797 1274 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 AP1S3Q96PC3 154 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 MNTQ99583 582 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 SPATA2Q9UM82 520 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 F8W810 466 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 ADCY5O95622 1261 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 CYP19A1P11511 503 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 C16orf72Q14CZ0 275 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 NDUFA5Q16718 116 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 GNPTABQ3T906 1256 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 SYTL3Q4VX76 610 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 NEK5Q6P3R8 708 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms