RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 PDE11AQ9HCR9 933 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 PUF60Q9UHX1 559 aaKnown RBP12.39□□□□□ -0.43
LSM3-201ENST00000306024 CBFA2T2O43439 604 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 RAD21O60216 631 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 RANBP6O60518 1105 aaKnown RBP12.39□□□□□ -0.43
LSM3-201ENST00000306024 NOP2P46087 812 aaKnown RBP12.39□□□□□ -0.43
LSM3-201ENST00000306024 STK38Q15208 465 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 VPS53Q5VIR6 699 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 GBP3Q9H0R5 595 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 PLEKHA4Q9H4M7 779 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 MKRN1Q9UHC7 482 aaKnown RBP12.39□□□□□ -0.43
LSM3-201ENST00000306024 TTF2Q9UNY4 1162 aaKnown RBP12.39□□□□□ -0.43
LSM3-201ENST00000306024 RIC1Q4ADV7 1423 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 DNAJC21Q5F1R6 531 aaKnown RBP12.39□□□□□ -0.43
LSM3-201ENST00000306024 STYK1Q6J9G0 422 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 HDXQ7Z353 690 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 UBAC1Q9BSL1 405 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 XPO4Q9C0E2 1151 aaKnown RBP12.39□□□□□ -0.43
LSM3-201ENST00000306024 SPON1Q9HCB6 807 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 MCM9Q9NXL9 1143 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 CEP83Q9Y592 693 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 HMGB1P09429 215 aaKnown RBP12.38□□□□□ -0.43
LSM3-201ENST00000306024 CCDC172P0C7W6 258 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 PICALMQ13492 652 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 KIF4BQ2VIQ3 1234 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 CRY2Q49AN0 593 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 MFSD6Q6ZSS7 791 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 FBXO33Q7Z6M2 555 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 KIAA0825Q8IV33 1275 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 NIM1KQ8IY84 436 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 MAP4K1Q92918 833 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 COA1Q9GZY4 146 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 MKNK2Q9HBH9 465 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 CC2D1AQ6P1N0 951 aaPredicted RBP12.38□□□□□ -0.43
LSM3-201ENST00000306024 CHST3Q7LGC8 479 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 LRRN4CLQ8ND94 238 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 NCOA7Q8NI08 942 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 DSCC1Q9BVC3 393 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 IL25Q9H293 177 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 RNF41Q9H4P4 317 aaPredicted RBP12.38□□□□□ -0.43
LSM3-201ENST00000306024 IMPACTQ9P2X3 320 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 BRWD3Q6RI45 1802 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 ATP2B1P20020 1258 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 SCNN1DP51172 638 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 DIXDC1Q155Q3 683 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 ME3Q16798 604 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 LONRF2Q1L5Z9 754 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 MCTP2Q6DN12 878 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 SDR42E1Q8WUS8 393 aa12.38□□□□□ -0.43
LSM3-201ENST00000306024 CCZ1BP86790 482 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 CCZ1P86791 482 aaPredicted RBP12.37□□□□□ -0.43
LSM3-201ENST00000306024 GBP6Q6ZN66 633 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 TEX11Q8IYF3 940 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 BRF1Q92994 677 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 ZNF512BQ96KM6 892 aaPredicted RBP12.37□□□□□ -0.43
LSM3-201ENST00000306024 POLLQ9UGP5 575 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 ERLIN2O94905 339 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 FGAP02671 866 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 LIG3P49916 1009 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 GUCY1B3Q02153 619 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 KARSQ15046 597 aaKnown RBP12.37□□□□□ -0.43
LSM3-201ENST00000306024 SOGA3Q5TF21 947 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 EP400NLQ6ZTU2 488 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 RTKN2Q8IZC4 609 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 UPF1Q92900 1129 aaKnown RBP eCLIP12.37□□□□□ -0.43
LSM3-201ENST00000306024 RHOXF2BP0C7M4 288 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 PLCG2P16885 1265 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 UBASH3AP57075 661 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 MECOMQ03112 1051 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 AOC3Q16853 763 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 RHOXF2Q9BQY4 288 aa12.37□□□□□ -0.43
LSM3-201ENST00000306024 SHTN1A0MZ66 631 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 EPB41L2O43491 1005 aaKnown RBP12.36□□□□□ -0.43
LSM3-201ENST00000306024 PPFIA3O75145 1194 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 DYNLL1P63167 89 aaKnown RBP12.36□□□□□ -0.43
LSM3-201ENST00000306024 PARD6BQ9BYG5 372 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 CXorf56Q9H5V9 222 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 RNF216Q9NWF9 866 aaPredicted RBP12.36□□□□□ -0.43
LSM3-201ENST00000306024 HDAC9Q9UKV0 1011 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 FAN1Q9Y2M0 1017 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 MMS22LQ6ZRQ5 1243 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 GOLGA6L9A6NEM1 432 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 POTEB2H3BUK9 544 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 EBAG9O00559 213 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 IFIT3O14879 490 aaKnown RBP12.36□□□□□ -0.43
LSM3-201ENST00000306024 AKAP17AQ02040 695 aaKnown RBP12.36□□□□□ -0.43
LSM3-201ENST00000306024 LCORLQ8N3X6 602 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 ZNF277Q9NRM2 450 aaPredicted RBP12.36□□□□□ -0.43
LSM3-201ENST00000306024 GJA3Q9Y6H8 435 aa12.36□□□□□ -0.43
LSM3-201ENST00000306024 PRKAB2O43741 272 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 RAD17O75943 681 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 ATP2B2Q01814 1243 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 RBM26Q5T8P6 1007 aaKnown RBP12.35□□□□□ -0.43
LSM3-201ENST00000306024 SARM1Q6SZW1 724 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 ARHGAP27Q6ZUM4 889 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 IFNL3Q8IZI9 196 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 CRACR2BQ8N4Y2 399 aaPredicted RBP12.35□□□□□ -0.43
LSM3-201ENST00000306024 NUP133Q8WUM0 1156 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 CRACR2AQ9BSW2 395 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 E4F1Q66K89 784 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms