RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 HMG20BQ9P0W2 317 aa25.25■■□□□ 1.63
SMCO4-201ENST00000298966 ASNSP08243 561 aa25.24■■□□□ 1.63
SMCO4-201ENST00000298966 MDM2Q00987 491 aaPredicted RBP25.24■■□□□ 1.63
SMCO4-201ENST00000298966 CACNB2Q08289 660 aaPredicted RBP25.24■■□□□ 1.63
SMCO4-201ENST00000298966 TICAM2Q86XR7 235 aa25.24■■□□□ 1.63
SMCO4-201ENST00000298966 NEUROD6Q96NK8 337 aa25.24■■□□□ 1.63
SMCO4-201ENST00000298966 NOL10Q9BSC4 688 aaKnown RBP25.24■■□□□ 1.63
SMCO4-201ENST00000298966 COL25A1Q9BXS0 654 aaPredicted RBP25.24■■□□□ 1.63
SMCO4-201ENST00000298966 PI4KBQ9UBF8 816 aa25.24■■□□□ 1.63
SMCO4-201ENST00000298966 C19orf81C9J6K1 198 aa25.23■■□□□ 1.63
SMCO4-201ENST00000298966 ATP5JP18859 108 aa25.23■■□□□ 1.63
SMCO4-201ENST00000298966 RGS2P41220 211 aa25.23■■□□□ 1.63
SMCO4-201ENST00000298966 LRRC26Q2I0M4 334 aa25.23■■□□□ 1.63
SMCO4-201ENST00000298966 GORABQ5T7V8 394 aa25.23■■□□□ 1.63
SMCO4-201ENST00000298966 PHF6Q8IWS0 365 aaKnown RBP eCLIP25.23■■□□□ 1.63
SMCO4-201ENST00000298966 SPATA5Q8NB90 893 aa25.23■■□□□ 1.63
SMCO4-201ENST00000298966 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.23■■□□□ 1.63
SMCO4-201ENST00000298966 CCDC8Q9H0W5 538 aaPredicted RBP25.23■■□□□ 1.63
SMCO4-201ENST00000298966 TXNRD2Q9NNW7 524 aa25.23■■□□□ 1.63
SMCO4-201ENST00000298966 DBNLQ9UJU6 430 aaKnown RBP25.23■■□□□ 1.63
SMCO4-201ENST00000298966 PEX10O60683 326 aa25.22■■□□□ 1.63
SMCO4-201ENST00000298966 SDSP20132 328 aa25.22■■□□□ 1.63
SMCO4-201ENST00000298966 TBC1D9Q6ZT07 1266 aa25.22■■□□□ 1.63
SMCO4-201ENST00000298966 GTF3C2Q8WUA4 911 aaPredicted RBP25.22■■□□□ 1.63
SMCO4-201ENST00000298966 DHX36Q9H2U1 1008 aaKnown RBP25.22■■□□□ 1.63
SMCO4-201ENST00000298966 CCND3P30281 292 aaPredicted RBP25.21■■□□□ 1.63
SMCO4-201ENST00000298966 LHX8Q68G74 356 aa25.21■■□□□ 1.63
SMCO4-201ENST00000298966 FAM109BQ6ICB4 259 aaPredicted RBP25.21■■□□□ 1.63
SMCO4-201ENST00000298966 USP6NLQ92738 828 aa25.21■■□□□ 1.63
SMCO4-201ENST00000298966 LBHD1Q9BQE6 289 aaPredicted RBP25.21■■□□□ 1.63
SMCO4-201ENST00000298966 UPF2Q9HAU5 1272 aaKnown RBP25.21■■□□□ 1.63
SMCO4-201ENST00000298966 CWC22Q9HCG8 908 aaKnown RBP25.21■■□□□ 1.63
SMCO4-201ENST00000298966 RBPJLQ9UBG7 517 aa25.21■■□□□ 1.63
SMCO4-201ENST00000298966 USP17L10C9JJH3 530 aa25.2■■□□□ 1.62
SMCO4-201ENST00000298966 ERVK-9P63128 1117 aa25.2■■□□□ 1.62
SMCO4-201ENST00000298966 ERVK-24P63145 666 aa25.2■■□□□ 1.62
SMCO4-201ENST00000298966 PI16Q6UXB8 463 aa25.2■■□□□ 1.62
SMCO4-201ENST00000298966 PLEKHH3Q7Z736 793 aa25.2■■□□□ 1.62
SMCO4-201ENST00000298966 SH3RF3Q8TEJ3 882 aaPredicted RBP25.2■■□□□ 1.62
SMCO4-201ENST00000298966 PAGR1Q9BTK6 254 aa25.2■■□□□ 1.62
SMCO4-201ENST00000298966 TRIM34Q9BYJ4 488 aa25.2■■□□□ 1.62
SMCO4-201ENST00000298966 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.2■■□□□ 1.62
SMCO4-201ENST00000298966 SIPA1L1O43166 1804 aa25.2■■□□□ 1.62
SMCO4-201ENST00000298966 CCL14Q16627 93 aa25.19■■□□□ 1.62
SMCO4-201ENST00000298966 CCDC158Q5M9N0 1113 aa25.19■■□□□ 1.62
SMCO4-201ENST00000298966 GPR142Q7Z601 462 aa25.19■■□□□ 1.62
SMCO4-201ENST00000298966 APBA2Q99767 749 aa25.19■■□□□ 1.62
SMCO4-201ENST00000298966 PORCNQ9H237 461 aa25.19■■□□□ 1.62
SMCO4-201ENST00000298966 GINM1Q9NU53 330 aa25.19■■□□□ 1.62
SMCO4-201ENST00000298966 LRP2BPQ9P2M1 347 aa25.19■■□□□ 1.62
SMCO4-201ENST00000298966 FRMPD3Q5JV73 1810 aa25.19■■□□□ 1.62
SMCO4-201ENST00000298966 TRIM6-TRIM34B2RNG4 842 aa25.18■■□□□ 1.62
SMCO4-201ENST00000298966 POTEB2H3BUK9 544 aa25.18■■□□□ 1.62
SMCO4-201ENST00000298966 BAG3O95817 575 aa25.18■■□□□ 1.62
SMCO4-201ENST00000298966 Q3C1V9 767 aa25.18■■□□□ 1.62
SMCO4-201ENST00000298966 MORN1Q5T089 497 aa25.18■■□□□ 1.62
SMCO4-201ENST00000298966 CRACR2BQ8N4Y2 399 aaPredicted RBP25.18■■□□□ 1.62
SMCO4-201ENST00000298966 EVI5LQ96CN4 794 aa25.18■■□□□ 1.62
SMCO4-201ENST00000298966 ZNF512BQ96KM6 892 aaPredicted RBP25.18■■□□□ 1.62
SMCO4-201ENST00000298966 DBNDD2Q9BQY9 259 aa25.18■■□□□ 1.62
SMCO4-201ENST00000298966 UNC80Q8N2C7 3258 aa25.18■■□□□ 1.62
SMCO4-201ENST00000298966 PLCG2P16885 1265 aa25.17■■□□□ 1.62
SMCO4-201ENST00000298966 ARID4AP29374 1257 aaPredicted RBP25.17■■□□□ 1.62
SMCO4-201ENST00000298966 FOXP4Q8IVH2 680 aaPredicted RBP25.17■■□□□ 1.62
SMCO4-201ENST00000298966 GUCD1Q96NT3 240 aa25.17■■□□□ 1.62
SMCO4-201ENST00000298966 TLR7Q9NYK1 1049 aaKnown RBP25.17■■□□□ 1.62
SMCO4-201ENST00000298966 HIP1O00291 1037 aa25.16■■□□□ 1.62
SMCO4-201ENST00000298966 GDF11O95390 407 aa25.16■■□□□ 1.62
SMCO4-201ENST00000298966 JAG1P78504 1218 aa25.16■■□□□ 1.62
SMCO4-201ENST00000298966 TSHZ3Q63HK5 1081 aa25.16■■□□□ 1.62
SMCO4-201ENST00000298966 MAP2K5Q13163 448 aa25.15■■□□□ 1.62
SMCO4-201ENST00000298966 MFSD14CQ5VZR4 134 aa25.15■■□□□ 1.62
SMCO4-201ENST00000298966 NAA16Q6N069 864 aaPredicted RBP25.15■■□□□ 1.62
SMCO4-201ENST00000298966 MAPKAPK5Q8IW41 473 aa25.15■■□□□ 1.62
SMCO4-201ENST00000298966 TGFBRAP1Q8WUH2 860 aa25.15■■□□□ 1.62
SMCO4-201ENST00000298966 FAM161BQ96MY7 647 aa25.15■■□□□ 1.62
SMCO4-201ENST00000298966 SENP6Q9GZR1 1112 aaPredicted RBP25.15■■□□□ 1.62
SMCO4-201ENST00000298966 AATFQ9NY61 560 aaKnown RBP eCLIP25.15■■□□□ 1.62
SMCO4-201ENST00000298966 ZBTB21Q9ULJ3 1066 aa25.15■■□□□ 1.62
SMCO4-201ENST00000298966 MAST2Q6P0Q8 1798 aa25.15■■□□□ 1.62
SMCO4-201ENST00000298966 UQCRFS1P1P0C7P4 283 aa25.14■■□□□ 1.62
SMCO4-201ENST00000298966 ZNF697Q5TEC3 545 aa25.14■■□□□ 1.62
SMCO4-201ENST00000298966 USP17L2Q6R6M4 530 aa25.14■■□□□ 1.62
SMCO4-201ENST00000298966 RILPL2Q969X0 211 aa25.14■■□□□ 1.62
SMCO4-201ENST00000298966 EDC3Q96F86 508 aaKnown RBP25.14■■□□□ 1.62
SMCO4-201ENST00000298966 HAUS7Q99871 368 aa25.14■■□□□ 1.62
SMCO4-201ENST00000298966 DNAJC18Q9H819 358 aa25.14■■□□□ 1.62
SMCO4-201ENST00000298966 PRKAG2Q9UGJ0 569 aa25.14■■□□□ 1.62
SMCO4-201ENST00000298966 CDK5RAP2Q96SN8 1893 aa25.14■■□□□ 1.61
SMCO4-201ENST00000298966 MCAMP43121 646 aa25.13■■□□□ 1.61
SMCO4-201ENST00000298966 CCNA1P78396 465 aa25.13■■□□□ 1.61
SMCO4-201ENST00000298966 METTL16Q86W50 562 aaKnown RBP25.13■■□□□ 1.61
SMCO4-201ENST00000298966 EMILIN3Q9NT22 766 aa25.13■■□□□ 1.61
SMCO4-201ENST00000298966 MSCO60682 206 aa25.12■■□□□ 1.61
SMCO4-201ENST00000298966 PPP4CP60510 307 aa25.12■■□□□ 1.61
SMCO4-201ENST00000298966 SHROOM1Q2M3G4 852 aaPredicted RBP25.12■■□□□ 1.61
SMCO4-201ENST00000298966 TTC39AQ5SRH9 613 aa25.12■■□□□ 1.61
SMCO4-201ENST00000298966 RABGAP1Q9Y3P9 1069 aa25.12■■□□□ 1.61
SMCO4-201ENST00000298966 FOCADQ5VW36 1801 aa25.12■■□□□ 1.61
SMCO4-201ENST00000298966 FLT1P17948 1338 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms