RNA–Protein interactions for RNA: ENST00000298173.7

GTF2A1-201, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 2

Gene GTF2A1, Length 1,677 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-201ENST00000298173 DEFB129Q9H1M3 183 aa28.8■■■□□ 2.2
GTF2A1-201ENST00000298173 MTMR4Q9NYA4 1195 aa28.8■■■□□ 2.2
GTF2A1-201ENST00000298173 ADD1P35611 737 aaKnown RBP28.79■■■□□ 2.2
GTF2A1-201ENST00000298173 CATIPQ7Z7H3 387 aa28.79■■■□□ 2.2
GTF2A1-201ENST00000298173 APOBEC3FQ8IUX4 373 aaKnown RBP28.79■■■□□ 2.2
GTF2A1-201ENST00000298173 FANCBQ8NB91 859 aa28.79■■■□□ 2.2
GTF2A1-201ENST00000298173 XPO5Q9HAV4 1204 aaKnown RBP eCLIP28.79■■■□□ 2.25e-6■■■□□ 17
GTF2A1-201ENST00000298173 JAK2O60674 1132 aa28.78■■■□□ 2.2
GTF2A1-201ENST00000298173 DDAH1O94760 285 aa28.78■■■□□ 2.2
GTF2A1-201ENST00000298173 RRP1BQ14684 758 aaKnown RBP28.78■■■□□ 2.2
GTF2A1-201ENST00000298173 PPP2R5BQ15173 497 aa28.78■■■□□ 2.2
GTF2A1-201ENST00000298173 NTRK3Q16288 839 aa28.78■■■□□ 2.2
GTF2A1-201ENST00000298173 TMEM47Q9BQJ4 181 aa28.78■■■□□ 2.2
GTF2A1-201ENST00000298173 GOLGA8AA7E2F4 631 aa28.77■■■□□ 2.2
GTF2A1-201ENST00000298173 CALM1P0DP23 149 aa28.77■■■□□ 2.2
GTF2A1-201ENST00000298173 CALM2P0DP24 149 aa28.77■■■□□ 2.2
GTF2A1-201ENST00000298173 CALM3P0DP25 149 aa28.77■■■□□ 2.2
GTF2A1-201ENST00000298173 KAT14Q9H8E8 782 aa28.77■■■□□ 2.2
GTF2A1-201ENST00000298173 STX8Q9UNK0 236 aa28.77■■■□□ 2.2
GTF2A1-201ENST00000298173 PITPNM2Q9BZ72 1349 aa28.76■■■□□ 2.2
GTF2A1-201ENST00000298173 SCN4AP35499 1836 aa28.76■■■□□ 2.19
GTF2A1-201ENST00000298173 CCDC144CPQ8IYA2 1237 aa28.76■■■□□ 2.19
GTF2A1-201ENST00000298173 NUP133Q8WUM0 1156 aa28.76■■■□□ 2.19
GTF2A1-201ENST00000298173 GGA3Q9NZ52 723 aa28.76■■■□□ 2.19
GTF2A1-201ENST00000298173 PTPDC1A2A3K4 754 aa28.75■■■□□ 2.19
GTF2A1-201ENST00000298173 NUCB2P80303 420 aa28.75■■■□□ 2.19
GTF2A1-201ENST00000298173 PKP1Q13835 747 aa28.75■■■□□ 2.19
GTF2A1-201ENST00000298173 PNMA1Q8ND90 353 aa28.75■■■□□ 2.19
GTF2A1-201ENST00000298173 MAP3K14Q99558 947 aa28.75■■■□□ 2.19
GTF2A1-201ENST00000298173 TOP1P11387 765 aaKnown RBP28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 FDPSP14324 419 aaKnown RBP28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 GUCY1A2P33402 732 aa28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 JAG1P78504 1218 aa28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 HMGN5P82970 282 aaKnown RBP28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 RTN1Q16799 776 aa28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 MIGA2Q7L4E1 593 aa28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 ZDHHC9Q9Y397 364 aa28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 CCDC196A0A1B0GTZ2 297 aa28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 CPLX1O14810 134 aa28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 RAB3GAP1Q15042 981 aa28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 ABCB5Q2M3G0 1257 aa28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 SHROOM1Q2M3G4 852 aaPredicted RBP28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 TMEM179Q6ZVK1 233 aa28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 PPP2R3BQ9Y5P8 575 aa28.74■■■□□ 2.19
GTF2A1-201ENST00000298173 POTECB2RU33 542 aa28.73■■■□□ 2.19
GTF2A1-201ENST00000298173 MPHOSPH10O00566 681 aaKnown RBP28.73■■■□□ 2.19
GTF2A1-201ENST00000298173 TTLL1O95922 423 aa28.73■■■□□ 2.19
GTF2A1-201ENST00000298173 SYT1P21579 422 aa28.73■■■□□ 2.19
GTF2A1-201ENST00000298173 USP50Q70EL3 339 aaPredicted RBP28.73■■■□□ 2.19
GTF2A1-201ENST00000298173 WDR90Q96KV7 1748 aa28.72■■■□□ 2.19
GTF2A1-201ENST00000298173 IFNAR1P17181 557 aa28.72■■■□□ 2.19
GTF2A1-201ENST00000298173 PPP4R3BQ5MIZ7 849 aa28.72■■■□□ 2.19
GTF2A1-201ENST00000298173 NBPF12Q5TAG4 269 aaPredicted RBP28.72■■■□□ 2.19
GTF2A1-201ENST00000298173 DDX11Q96FC9 970 aa28.72■■■□□ 2.19
GTF2A1-201ENST00000298173 KANSL2Q9H9L4 492 aa28.72■■■□□ 2.19
GTF2A1-201ENST00000298173 PHF20L1A8MW92 1017 aa28.71■■■□□ 2.19
GTF2A1-201ENST00000298173 EPHX2P34913 555 aa28.71■■■□□ 2.19
GTF2A1-201ENST00000298173 SIAH1Q8IUQ4 282 aa28.71■■■□□ 2.19
GTF2A1-201ENST00000298173 MKL1Q969V6 931 aa28.71■■■□□ 2.19
GTF2A1-201ENST00000298173 RBM28Q9NW13 759 aaKnown RBP28.71■■■□□ 2.19
GTF2A1-201ENST00000298173 MYH4Q9Y623 1939 aa28.71■■■□□ 2.19
GTF2A1-201ENST00000298173 CDKL5O76039 1030 aa28.7■■■□□ 2.19
GTF2A1-201ENST00000298173 GDF11O95390 407 aa28.7■■■□□ 2.19
GTF2A1-201ENST00000298173 BRD1O95696 1058 aa28.7■■■□□ 2.19
GTF2A1-201ENST00000298173 CPLX2Q6PUV4 134 aaKnown RBP28.7■■■□□ 2.19
GTF2A1-201ENST00000298173 CLEC10AQ8IUN9 316 aa28.7■■■□□ 2.19
GTF2A1-201ENST00000298173 NYAP2Q9P242 653 aa28.7■■■□□ 2.19
GTF2A1-201ENST00000298173 PDIA4P13667 645 aaKnown RBP28.7■■■□□ 2.18
GTF2A1-201ENST00000298173 SEPT2Q15019 361 aa28.7■■■□□ 2.18
GTF2A1-201ENST00000298173 LARP1BQ659C4 914 aaKnown RBP28.7■■■□□ 2.18
GTF2A1-201ENST00000298173 NBPF11Q86T75 865 aa28.7■■■□□ 2.18
GTF2A1-201ENST00000298173 CLIP2Q9UDT6 1046 aa28.7■■■□□ 2.18
GTF2A1-201ENST00000298173 GH2P01242 217 aa28.69■■■□□ 2.18
GTF2A1-201ENST00000298173 PDCP20941 246 aa28.69■■■□□ 2.18
GTF2A1-201ENST00000298173 FUT2Q10981 343 aa28.69■■■□□ 2.18
GTF2A1-201ENST00000298173 ZC3H15Q8WU90 426 aaKnown RBP28.69■■■□□ 2.18
GTF2A1-201ENST00000298173 CABP5Q9NP86 173 aa28.69■■■□□ 2.18
GTF2A1-201ENST00000298173 STX6O43752 255 aa28.68■■■□□ 2.18
GTF2A1-201ENST00000298173 PPFIA3O75145 1194 aa28.68■■■□□ 2.18
GTF2A1-201ENST00000298173 CAP2P40123 477 aa28.68■■■□□ 2.18
GTF2A1-201ENST00000298173 GRM4Q14833 912 aa28.68■■■□□ 2.18
GTF2A1-201ENST00000298173 CTCFLQ8NI51 663 aaPredicted RBP28.68■■■□□ 2.18
GTF2A1-201ENST00000298173 TAF1DQ9H5J8 278 aaPredicted RBP28.68■■■□□ 2.18
GTF2A1-201ENST00000298173 IQCA1LA6NCM1 817 aa28.67■■■□□ 2.18
GTF2A1-201ENST00000298173 ORC3Q9UBD5 711 aaPredicted RBP28.67■■■□□ 2.18
GTF2A1-201ENST00000298173 EEF2P13639 858 aaKnown RBP28.67■■■□□ 2.18
GTF2A1-201ENST00000298173 FAM184AQ8NB25 1140 aa28.67■■■□□ 2.18
GTF2A1-201ENST00000298173 PHKBQ93100 1093 aa28.67■■■□□ 2.18
GTF2A1-201ENST00000298173 HOOK2Q96ED9 719 aa28.67■■■□□ 2.18
GTF2A1-201ENST00000298173 MAD2L2Q9UI95 211 aa28.67■■■□□ 2.18
GTF2A1-201ENST00000298173 STK36Q9NRP7 1315 aa28.66■■■□□ 2.18
GTF2A1-201ENST00000298173 PALM3A6NDB9 673 aaPredicted RBP28.66■■■□□ 2.18
GTF2A1-201ENST00000298173 FMNL1O95466 1100 aaPredicted RBP28.66■■■□□ 2.18
GTF2A1-201ENST00000298173 KIF5BP33176 963 aa28.66■■■□□ 2.18
GTF2A1-201ENST00000298173 PRAMEF18Q5VWM3 479 aa28.66■■■□□ 2.18
GTF2A1-201ENST00000298173 TMTC3Q6ZXV5 915 aa28.66■■■□□ 2.18
GTF2A1-201ENST00000298173 DCPSQ96C86 337 aaKnown RBP28.66■■■□□ 2.18
GTF2A1-201ENST00000298173 KIF3AQ9Y496 699 aa28.66■■■□□ 2.18
GTF2A1-201ENST00000298173 SNHG28P0DPA3 235 aa28.65■■■□□ 2.18
GTF2A1-201ENST00000298173 CMTR1Q8N1G2 835 aaKnown RBP28.65■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms