RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TMTC2Q8N394 836 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 MED15Q96RN5 788 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.98■□□□□ 0.63
VPS54-201ENST00000272322 PNPLA7Q6ZV29 1317 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 A0A0U1RQJ8 604 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 PP2D1A8MPX8 630 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 F8W031 263 aaPredicted RBP18.98■□□□□ 0.63
VPS54-201ENST00000272322 NYAP1Q6ZVC0 841 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 TGFBRAP1Q8WUH2 860 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 ATRIPQ8WXE1 791 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 RAD21O60216 631 aa18.97■□□□□ 0.63
VPS54-201ENST00000272322 TROAPQ12815 778 aa18.97■□□□□ 0.63
VPS54-201ENST00000272322 TICAM2Q86XR7 235 aa18.97■□□□□ 0.63
VPS54-201ENST00000272322 OSBPL5Q9H0X9 879 aaPredicted RBP18.97■□□□□ 0.63
VPS54-201ENST00000272322 FOXP1Q9H334 677 aaPredicted RBP18.97■□□□□ 0.63
VPS54-201ENST00000272322 MTERF4Q7Z6M4 381 aaKnown RBP18.97■□□□□ 0.63
VPS54-201ENST00000272322 LZTFL1Q9NQ48 299 aa18.97■□□□□ 0.63
VPS54-201ENST00000272322 CD44P16070 742 aaKnown RBP18.97■□□□□ 0.63
VPS54-201ENST00000272322 UBE4AQ14139 1066 aa18.97■□□□□ 0.63
VPS54-201ENST00000272322 HOOK1Q9UJC3 728 aaKnown RBP18.97■□□□□ 0.63
VPS54-201ENST00000272322 CTIFO43310 598 aaKnown RBP18.96■□□□□ 0.63
VPS54-201ENST00000272322 CCDC150Q8NCX0 1101 aa18.96■□□□□ 0.63
VPS54-201ENST00000272322 CCNL1Q9UK58 526 aaPredicted RBP18.96■□□□□ 0.63
VPS54-201ENST00000272322 NUP98P52948 1817 aa18.96■□□□□ 0.63
VPS54-201ENST00000272322 COL1A1P02452 1464 aaPredicted RBP18.96■□□□□ 0.63
VPS54-201ENST00000272322 EIF6P56537 245 aaKnown RBP18.96■□□□□ 0.63
VPS54-201ENST00000272322 TTC38Q5R3I4 469 aa18.96■□□□□ 0.63
VPS54-201ENST00000272322 TIGD1Q96MW7 591 aa18.95■□□□□ 0.62
VPS54-201ENST00000272322 CRNKL1Q9BZJ0 848 aaKnown RBP18.95■□□□□ 0.62
VPS54-201ENST00000272322 GNG11P61952 73 aa18.95■□□□□ 0.62
VPS54-201ENST00000272322 TOGARAM2Q6ZUX3 1019 aa18.95■□□□□ 0.62
VPS54-201ENST00000272322 HEATR3Q7Z4Q2 680 aa18.95■□□□□ 0.62
VPS54-201ENST00000272322 SRPRBQ9Y5M8 271 aaKnown RBP18.95■□□□□ 0.62
VPS54-201ENST00000272322 DISP2A7MBM2 1401 aa18.95■□□□□ 0.62
VPS54-201ENST00000272322 ITGB4P16144 1822 aa18.95■□□□□ 0.62
VPS54-201ENST00000272322 MDM2Q00987 491 aaPredicted RBP18.95■□□□□ 0.62
VPS54-201ENST00000272322 VPS16Q9H269 839 aa18.95■□□□□ 0.62
VPS54-201ENST00000272322 ST7Q9NRC1 585 aa18.95■□□□□ 0.62
VPS54-201ENST00000272322 SHANK3Q9BYB0 1731 aa18.95■□□□□ 0.62
VPS54-201ENST00000272322 ZNF804BA4D1E1 1349 aa18.95■□□□□ 0.62
VPS54-201ENST00000272322 SH3RF3Q8TEJ3 882 aaPredicted RBP18.94■□□□□ 0.62
VPS54-201ENST00000272322 ARHGEF1Q92888 912 aaKnown RBP18.94■□□□□ 0.62
VPS54-201ENST00000272322 IKBKBO14920 756 aa18.94■□□□□ 0.62
VPS54-201ENST00000272322 TPTE2Q6XPS3 522 aa18.94■□□□□ 0.62
VPS54-201ENST00000272322 BRMS1Q9HCU9 246 aa18.94■□□□□ 0.62
VPS54-201ENST00000272322 MYH14Q7Z406 1995 aaKnown RBP18.94■□□□□ 0.62
VPS54-201ENST00000272322 ACTN4O43707 911 aaKnown RBP18.94■□□□□ 0.62
VPS54-201ENST00000272322 KMT5BQ4FZB7 885 aa18.94■□□□□ 0.62
VPS54-201ENST00000272322 VSTM4Q8IW00 320 aa18.94■□□□□ 0.62
VPS54-201ENST00000272322 RNF26Q9BY78 433 aaPredicted RBP18.94■□□□□ 0.62
VPS54-201ENST00000272322 IMPACTQ9P2X3 320 aa18.94■□□□□ 0.62
VPS54-201ENST00000272322 CTNND2Q9UQB3 1225 aa18.94■□□□□ 0.62
VPS54-201ENST00000272322 SLURP2P0DP57 97 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 FBXO38Q6PIJ6 1188 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 ANKRD7Q92527 254 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 BAG1Q99933 345 aaPredicted RBP18.93■□□□□ 0.62
VPS54-201ENST00000272322 KAT14Q9H8E8 782 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 ATRNO75882 1429 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 SLU7O95391 586 aaKnown RBP18.93■□□□□ 0.62
VPS54-201ENST00000272322 TFRCP02786 760 aaKnown RBP18.93■□□□□ 0.62
VPS54-201ENST00000272322 RFC4P35249 363 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 RRAGBQ5VZM2 374 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 PAGE5Q96GU1 130 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 CARD6Q9BX69 1037 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 MYH2Q9UKX2 1941 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 PLEKHG2Q9H7P9 1386 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 SOWAHDA6NJG2 315 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 CBFA2T2O43439 604 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 SMARCC1Q92922 1105 aaPredicted RBP18.93■□□□□ 0.62
VPS54-201ENST00000272322 AK7Q96M32 723 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 CEP131Q9UPN4 1083 aa18.93■□□□□ 0.62
VPS54-201ENST00000272322 RTCBQ9Y3I0 505 aaKnown RBP18.93■□□□□ 0.62
VPS54-201ENST00000272322 PLCD1P51178 756 aa18.92■□□□□ 0.62
VPS54-201ENST00000272322 BPIFA3Q9BQP9 254 aa18.92■□□□□ 0.62
VPS54-201ENST00000272322 SPATA31A5Q5VU36 1347 aa18.92■□□□□ 0.62
VPS54-201ENST00000272322 SPATA31A7Q8IWB4 1347 aa18.92■□□□□ 0.62
VPS54-201ENST00000272322 STK36Q9NRP7 1315 aa18.92■□□□□ 0.62
VPS54-201ENST00000272322 FANCGO15287 622 aa18.92■□□□□ 0.62
VPS54-201ENST00000272322 CUL4BQ13620 913 aa18.92■□□□□ 0.62
VPS54-201ENST00000272322 TMTC3Q6ZXV5 915 aa18.92■□□□□ 0.62
VPS54-201ENST00000272322 BAZ2AQ9UIF9 1905 aaKnown RBP18.92■□□□□ 0.62
VPS54-201ENST00000272322 ABCC6O95255 1503 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 DPYDQ12882 1025 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 INF2Q27J81 1249 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 CLEC10AQ8IUN9 316 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 MNS1Q8NEH6 495 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 WDR24Q96S15 920 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 PHF20Q9BVI0 1012 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 FUT2Q10981 343 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 SF3B3Q15393 1217 aaKnown RBP18.91■□□□□ 0.62
VPS54-201ENST00000272322 TYW1BQ6NUM6 668 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 GDAQ9Y2T3 454 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 LRP6O75581 1613 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 TSPY3P0CV98 308 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 TSPY8P0CW00 308 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 PICALMQ13492 652 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 ARHGAP29Q52LW3 1261 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 PNMA1Q8ND90 353 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 RTL9Q8NET4 1388 aa18.91■□□□□ 0.62
VPS54-201ENST00000272322 RIMBP2O15034 1052 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms