RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 SH3BP5LQ7L8J4 393 aa19.02■□□□□ 0.64
TPM1-201ENST00000267996 JDP2Q8WYK2 163 aa19.02■□□□□ 0.64
TPM1-201ENST00000267996 SPON1Q9HCB6 807 aa19.02■□□□□ 0.64
TPM1-201ENST00000267996 ZBTB12Q9Y330 459 aaPredicted RBP19.02■□□□□ 0.64
TPM1-201ENST00000267996 IGKV6D-41A0A0C4DH26 115 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 DEXIO95424 95 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 MBD3O95983 291 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 GSE1Q14687 1217 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 CIAPIN1Q6FI81 312 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 METTL16Q86W50 562 aaKnown RBP19.01■□□□□ 0.63
TPM1-201ENST00000267996 OGFOD1Q8N543 542 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 PNMA1Q8ND90 353 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 CTCFLQ8NI51 663 aaPredicted RBP19.01■□□□□ 0.63
TPM1-201ENST00000267996 TMEM47Q9BQJ4 181 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 GJB4Q9NTQ9 266 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 ELP1O95163 1332 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 DDTLA6NHG4 134 aaPredicted RBP19.01■□□□□ 0.63
TPM1-201ENST00000267996 FIBPO43427 364 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 NCLP19338 710 aaKnown RBP19.01■□□□□ 0.63
TPM1-201ENST00000267996 MMP14P50281 582 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 ATL3Q6DD88 541 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 ZBED3Q96IU2 234 aaPredicted RBP19.01■□□□□ 0.63
TPM1-201ENST00000267996 SCAND2PQ9GZW5 306 aaPredicted RBP19.01■□□□□ 0.63
TPM1-201ENST00000267996 PI4KBQ9UBF8 816 aa19.01■□□□□ 0.63
TPM1-201ENST00000267996 MYH15Q9Y2K3 1946 aa19■□□□□ 0.63
TPM1-201ENST00000267996 UBE2Q2LH0YL09 131 aa19■□□□□ 0.63
TPM1-201ENST00000267996 PRPF3O43395 683 aaKnown RBP19■□□□□ 0.63
TPM1-201ENST00000267996 GADD45BO75293 160 aaPredicted RBP19■□□□□ 0.63
TPM1-201ENST00000267996 PLEKHA8P1O95397 391 aa19■□□□□ 0.63
TPM1-201ENST00000267996 GUCY1A2P33402 732 aa19■□□□□ 0.63
TPM1-201ENST00000267996 GRM4Q14833 912 aa19■□□□□ 0.63
TPM1-201ENST00000267996 TNIP1Q15025 636 aa19■□□□□ 0.63
TPM1-201ENST00000267996 DLGAP5Q15398 846 aa19■□□□□ 0.63
TPM1-201ENST00000267996 KRT40Q6A162 431 aa19■□□□□ 0.63
TPM1-201ENST00000267996 CMTR1Q8N1G2 835 aaKnown RBP19■□□□□ 0.63
TPM1-201ENST00000267996 MYH8P13535 1937 aa19■□□□□ 0.63
TPM1-201ENST00000267996 GREB1LQ9C091 1923 aaPredicted RBP18.99■□□□□ 0.63
TPM1-201ENST00000267996 AKR1B1P15121 316 aa18.99■□□□□ 0.63
TPM1-201ENST00000267996 KIF5BP33176 963 aa18.99■□□□□ 0.63
TPM1-201ENST00000267996 KIF23Q02241 960 aaPredicted RBP18.99■□□□□ 0.63
TPM1-201ENST00000267996 TCP10Q12799 353 aa18.99■□□□□ 0.63
TPM1-201ENST00000267996 FOXP4Q8IVH2 680 aaPredicted RBP18.99■□□□□ 0.63
TPM1-201ENST00000267996 CEP95Q96GE4 821 aa18.99■□□□□ 0.63
TPM1-201ENST00000267996 DNAJC18Q9H819 358 aa18.99■□□□□ 0.63
TPM1-201ENST00000267996 CNTNAP5Q8WYK1 1306 aa18.99■□□□□ 0.63
TPM1-201ENST00000267996 TOP1P11387 765 aaKnown RBP18.98■□□□□ 0.63
TPM1-201ENST00000267996 PRELPP51888 382 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 UBE2HP62256 183 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 SPDYE2Q495Y8 402 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 FKBP1CQ5VVH2 108 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 BRAPQ7Z569 592 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 SRBD1Q8N5C6 995 aaKnown RBP18.98■□□□□ 0.63
TPM1-201ENST00000267996 CCDC17Q96LX7 622 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 MTMR4Q9NYA4 1195 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 ZNF70Q9UC06 446 aaPredicted RBP18.98■□□□□ 0.63
TPM1-201ENST00000267996 STX8Q9UNK0 236 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 MYH6P13533 1939 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 FZD9O00144 591 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 RPS12P25398 132 aaKnown RBP18.98■□□□□ 0.63
TPM1-201ENST00000267996 RASSF7Q02833 373 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 PKN1Q16512 942 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 CCDC82Q8N4S0 544 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 LEO1Q8WVC0 666 aaPredicted RBP18.98■□□□□ 0.63
TPM1-201ENST00000267996 TFIP11Q9UBB9 837 aaKnown RBP18.98■□□□□ 0.63
TPM1-201ENST00000267996 CFAP45Q9UL16 551 aa18.98■□□□□ 0.63
TPM1-201ENST00000267996 GNAQP50148 359 aa18.97■□□□□ 0.63
TPM1-201ENST00000267996 ZNF280AP59817 542 aaPredicted RBP18.97■□□□□ 0.63
TPM1-201ENST00000267996 TRIM29Q14134 588 aa18.97■□□□□ 0.63
TPM1-201ENST00000267996 TATDN1Q6P1N9 297 aa18.97■□□□□ 0.63
TPM1-201ENST00000267996 ZNF396Q96N95 335 aaPredicted RBP18.97■□□□□ 0.63
TPM1-201ENST00000267996 GZF1Q9H116 711 aaPredicted RBP18.97■□□□□ 0.63
TPM1-201ENST00000267996 TMOD2Q9NZR1 351 aa18.97■□□□□ 0.63
TPM1-201ENST00000267996 PALM3A6NDB9 673 aaPredicted RBP18.96■□□□□ 0.63
TPM1-201ENST00000267996 KIF28PB7ZC32 967 aa18.96■□□□□ 0.63
TPM1-201ENST00000267996 U2AF2P26368 475 aaKnown RBP eCLIP18.96■□□□□ 0.634e-8■■■■■ 35.5
TPM1-201ENST00000267996 AKAP17AQ02040 695 aaKnown RBP18.96■□□□□ 0.63
TPM1-201ENST00000267996 MAD2L2Q9UI95 211 aa18.96■□□□□ 0.63
TPM1-201ENST00000267996 RCOR1Q9UKL0 485 aa18.96■□□□□ 0.63
TPM1-201ENST00000267996 V9GY48 417 aaPredicted RBP18.96■□□□□ 0.63
TPM1-201ENST00000267996 ZSCAN29Q8IWY8 852 aaPredicted RBP18.95■□□□□ 0.62
TPM1-201ENST00000267996 FAM151AQ8WW52 585 aa18.95■□□□□ 0.62
TPM1-201ENST00000267996 MMP1P03956 469 aa18.95■□□□□ 0.62
TPM1-201ENST00000267996 MYSM1Q5VVJ2 828 aa18.95■□□□□ 0.62
TPM1-201ENST00000267996 SPATA32Q96LK8 384 aa18.95■□□□□ 0.62
TPM1-201ENST00000267996 USP28Q96RU2 1077 aa18.95■□□□□ 0.62
TPM1-201ENST00000267996 LZTS2Q9BRK4 669 aa18.95■□□□□ 0.62
TPM1-201ENST00000267996 RBM27Q9P2N5 1060 aaKnown RBP18.95■□□□□ 0.62
TPM1-201ENST00000267996 CNTNAP1P78357 1384 aa18.94■□□□□ 0.62
TPM1-201ENST00000267996 CLRN2A0PK11 232 aa18.94■□□□□ 0.62
TPM1-201ENST00000267996 SLURP2P0DP57 97 aa18.94■□□□□ 0.62
TPM1-201ENST00000267996 PPP4R3BQ5MIZ7 849 aa18.94■□□□□ 0.62
TPM1-201ENST00000267996 CAVIN1Q6NZI2 390 aaKnown RBP18.94■□□□□ 0.62
TPM1-201ENST00000267996 STAG2Q8N3U4 1231 aa18.94■□□□□ 0.62
TPM1-201ENST00000267996 DPF2Q92785 391 aa18.94■□□□□ 0.62
TPM1-201ENST00000267996 SHISA4Q96DD7 197 aa18.94■□□□□ 0.62
TPM1-201ENST00000267996 TTLL1O95922 423 aa18.93■□□□□ 0.62
TPM1-201ENST00000267996 FAM83AQ86UY5 434 aa18.93■□□□□ 0.62
TPM1-201ENST00000267996 MYOZ2Q9NPC6 264 aa18.93■□□□□ 0.62
TPM1-201ENST00000267996 RTEL1Q9NZ71 1219 aa18.93■□□□□ 0.62
TPM1-201ENST00000267996 TCP10L2B9ZVM9 353 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms