RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 TYW1BQ6NUM6 668 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 CUTAO60888 179 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 PMS1P54277 932 aaKnown RBP12.23□□□□□ -0.45
USP28-201ENST00000003302 BICDL1Q6ZP65 573 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 ZNF34Q8IZ26 560 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 DNAJC5Q9H3Z4 198 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 XDHP47989 1333 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 PNKPQ96T60 521 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 LRP2BPQ9P2M1 347 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 STARD3NLO95772 234 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 CASP14P31944 242 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 LIFRP42702 1097 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 PPARAQ07869 468 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 NR1I3Q14994 352 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 SLC35G1Q2M3R5 365 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 TIGD1Q96MW7 591 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 GDAQ9Y2T3 454 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 CDK11BP21127 795 aaKnown RBP12.22□□□□□ -0.45
USP28-201ENST00000003302 CYP7A1P22680 504 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 FAM205AQ6ZU69 1335 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 GYPCP04921 128 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 CUL4BQ13620 913 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 TMEM87BQ96K49 555 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 PARD6BQ9BYG5 372 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 BCL9O00512 1426 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 CDHR2Q9BYE9 1310 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 SPECC1LQ69YQ0 1117 aa12.22□□□□□ -0.45
USP28-201ENST00000003302 SRBD1Q8N5C6 995 aaKnown RBP12.22□□□□□ -0.45
USP28-201ENST00000003302 ERVK-24P63145 666 aa12.21□□□□□ -0.45
USP28-201ENST00000003302 GRIK5Q16478 980 aa12.21□□□□□ -0.45
USP28-201ENST00000003302 GPKOWQ92917 476 aaPredicted RBP eCLIP12.21□□□□□ -0.45
USP28-201ENST00000003302 MPHOSPH8Q99549 860 aa12.21□□□□□ -0.45
USP28-201ENST00000003302 CHP1Q99653 195 aa12.21□□□□□ -0.45
USP28-201ENST00000003302 TRIM29Q14134 588 aa12.21□□□□□ -0.45
USP28-201ENST00000003302 SMARCE1Q969G3 411 aa12.21□□□□□ -0.45
USP28-201ENST00000003302 PAGE5Q96GU1 130 aa12.21□□□□□ -0.45
USP28-201ENST00000003302 RIOK1Q9BRS2 568 aaKnown RBP12.21□□□□□ -0.45
USP28-201ENST00000003302 VPS16Q9H269 839 aa12.21□□□□□ -0.45
USP28-201ENST00000003302 TFCP2L1Q9NZI6 479 aa12.21□□□□□ -0.45
USP28-201ENST00000003302 MRPS25P82663 173 aaKnown RBP12.21□□□□□ -0.46
USP28-201ENST00000003302 SPATA20Q8TB22 786 aa12.21□□□□□ -0.46
USP28-201ENST00000003302 UBXN4Q92575 508 aa12.21□□□□□ -0.46
USP28-201ENST00000003302 CELF1Q92879 486 aaKnown RBP12.21□□□□□ -0.46
USP28-201ENST00000003302 GPR101Q96P66 508 aaPredicted RBP12.21□□□□□ -0.46
USP28-201ENST00000003302 PPP1R3GB7ZBB8 358 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 PRDX5P30044 214 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 MAP3K9P80192 1104 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 TROAPQ12815 778 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 HPS3Q969F9 1004 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 MRFAP1Q9Y605 127 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 PLEKHG2Q9H7P9 1386 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 KLK7P49862 253 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 FAM182BQ5T319 152 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 STAG1Q8WVM7 1258 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 GDAP1L1Q96MZ0 367 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 HDAC6Q9UBN7 1215 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 PTGDRQ13258 359 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 NT5DC1Q5TFE4 455 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 DOCK2Q92608 1830 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 BCORQ6W2J9 1755 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 ENC1O14682 589 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 CRKLP46109 303 aaKnown RBP12.2□□□□□ -0.46
USP28-201ENST00000003302 OLFM4Q6UX06 510 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 STAG2Q8N3U4 1231 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 CCDC12Q8WUD4 166 aaPredicted RBP12.2□□□□□ -0.46
USP28-201ENST00000003302 CTNND2Q9UQB3 1225 aa12.2□□□□□ -0.46
USP28-201ENST00000003302 SRPRBQ9Y5M8 271 aaKnown RBP12.2□□□□□ -0.46
USP28-201ENST00000003302 USP17L12C9JPN9 530 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 USP17L21D6R901 530 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 MAP3K12Q12852 859 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 CC2D1AQ6P1N0 951 aaPredicted RBP12.19□□□□□ -0.46
USP28-201ENST00000003302 NOA1Q8NC60 698 aaKnown RBP12.19□□□□□ -0.46
USP28-201ENST00000003302 UIMC1Q96RL1 719 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 RAI14Q9P0K7 980 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 CACNA1SQ13698 1873 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 SLURP2P0DP57 97 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 EIF5P55010 431 aaKnown RBP12.19□□□□□ -0.46
USP28-201ENST00000003302 AATFQ9NY61 560 aaKnown RBP eCLIP12.19□□□□□ -0.46
USP28-201ENST00000003302 NIP7Q9Y221 180 aaKnown RBP eCLIP12.19□□□□□ -0.46
USP28-201ENST00000003302 BCL9LQ86UU0 1499 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 WDR19Q8NEZ3 1342 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 CEP350Q5VT06 3117 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 KIF20AO95235 890 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 MCM7P33993 719 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 PPP2R3AQ06190 1150 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 PIK3AP1Q6ZUJ8 805 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 SLC44A5Q8NCS7 719 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 ANKZF1Q9H8Y5 726 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 TAB2Q9NYJ8 693 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 ADD3Q9UEY8 706 aaKnown RBP12.19□□□□□ -0.46
USP28-201ENST00000003302 ADGRG1Q9Y653 693 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 A0A1B0GTH6 734 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 ARHGAP6O43182 974 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 IGSF22Q8N9C0 903 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 TNFRSF25Q93038 417 aa12.19□□□□□ -0.46
USP28-201ENST00000003302 ZNF512BQ96KM6 892 aaPredicted RBP12.19□□□□□ -0.46
USP28-201ENST00000003302 PHLPP2Q6ZVD8 1323 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 ABCA3Q99758 1704 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 SRGAP2O75044 1071 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 TTF1Q15361 905 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms