RNA–Protein interactions for RNA: ENSMUST00000056508.11

Clcn3-202, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS P4 TSL 1 (best) BASIC

Gene Clcn3, Length 5,684 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-202ENSMUST00000056508 Krtap4-7Q9D732 168 aa3.33□□□□□ -1.88
Clcn3-202ENSMUST00000056508 Dnah1E9Q8T7 4250 aa3.32□□□□□ -1.88
Clcn3-202ENSMUST00000056508 Gm9736A0A1W2P7N1 277 aa3.31□□□□□ -1.88
Clcn3-202ENSMUST00000056508 Dnah11E9Q7N9 4488 aa3.31□□□□□ -1.88
Clcn3-202ENSMUST00000056508 Gm10100J3QK64 120 aa3.31□□□□□ -1.88
Clcn3-202ENSMUST00000056508 Krtap28-10A0A1Y7VP58 119 aa3.31□□□□□ -1.88
Clcn3-202ENSMUST00000056508 Kmt2aP55200 3966 aa3.29□□□□□ -1.88
Clcn3-202ENSMUST00000056508 Itpr2Q9Z329 2701 aa3.29□□□□□ -1.88
Clcn3-202ENSMUST00000056508 Dnah3Q8BW94 4083 aa3.29□□□□□ -1.88
Clcn3-202ENSMUST00000056508 Lce1jD3YUU5 139 aa3.28□□□□□ -1.88
Clcn3-202ENSMUST00000056508 ApcQ61315 2845 aa3.27□□□□□ -1.89
Clcn3-202ENSMUST00000056508 Krtap9-5A2A5X3 358 aa3.24□□□□□ -1.89
Clcn3-202ENSMUST00000056508 Dnah7bL7N1Y0 4068 aa3.24□□□□□ -1.89
Clcn3-202ENSMUST00000056508 Dnah6E9Q0B6 4144 aa3.24□□□□□ -1.89
Clcn3-202ENSMUST00000056508 Stard9Q80TF6 4561 aa3.24□□□□□ -1.89
Clcn3-202ENSMUST00000056508 Gm11555B1AQ89 175 aa3.23□□□□□ -1.89
Clcn3-202ENSMUST00000056508 Gm6358A0A087WPH4 74 aa3.21□□□□□ -1.9
Clcn3-202ENSMUST00000056508 Lce3bQ9CQM7 98 aa3.21□□□□□ -1.9
Clcn3-202ENSMUST00000056508 TnxbO35452 4006 aa3.21□□□□□ -1.9
Clcn3-202ENSMUST00000056508 PcloQ9QYX7 5068 aa3.19□□□□□ -1.9
Clcn3-202ENSMUST00000056508 Lce1mQ9CR91 182 aa3.19□□□□□ -1.9
Clcn3-202ENSMUST00000056508 A0A1Y7VJ07 166 aa3.18□□□□□ -1.9
Clcn3-202ENSMUST00000056508 Dnah9B1AR51 4484 aa3.17□□□□□ -1.9
Clcn3-202ENSMUST00000056508 A030005L19RikA0A1Y7VIU2 113 aa3.17□□□□□ -1.9
Clcn3-202ENSMUST00000056508 A030005K14RikA0A1Y7VNY1 122 aa3.16□□□□□ -1.9
Clcn3-202ENSMUST00000056508 Krtap19-9bQ99NG9 58 aa3.16□□□□□ -1.9
Clcn3-202ENSMUST00000056508 Gm7544A0A1Y7VJ58 118 aa3.16□□□□□ -1.9
Clcn3-202ENSMUST00000056508 Dnah17Q69Z23 4481 aa3.15□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Dnah7aE9Q0T8 4024 aa3.15□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Krtap1-5A2A590 122 aa3.14□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Gm10318A0A1W2P728 225 aa3.14□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Dnah7cA0A087WR13 4024 aa3.14□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Krtap12-1Q9Z287 130 aa3.12□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Lce3cQ91V05 98 aa3.12□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Lce1hQ9D6R3 140 aa3.12□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Hectd4E9Q2E4 4418 aa3.11□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Lce1bQ9D149 137 aa3.1□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Krtap4-2B1AQ85 167 aa3.1□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Krtap19-9aF8WH65 55 aa3.1□□□□□ -1.91
Clcn3-202ENSMUST00000056508 PrkdcP97313 4128 aa3.09□□□□□ -1.91
Clcn3-202ENSMUST00000056508 Krtap28-13A0A087WQP5 138 aa3.08□□□□□ -1.92
Clcn3-202ENSMUST00000056508 Dync2h1Q45VK7 4306 aa3.05□□□□□ -1.92
Clcn3-202ENSMUST00000056508 2310046K23RikA0A0A6YVW6 87 aa3.05□□□□□ -1.92
Clcn3-202ENSMUST00000056508 Krtap19-5O08632 62 aa3.05□□□□□ -1.92
Clcn3-202ENSMUST00000056508 Dnah2P0C6F1 4456 aa3.05□□□□□ -1.92
Clcn3-202ENSMUST00000056508 Ryr3A2AGL3 4863 aa3.04□□□□□ -1.92
Clcn3-202ENSMUST00000056508 Dnah14A0A140LIJ4 4489 aa3.04□□□□□ -1.92
Clcn3-202ENSMUST00000056508 Gm38119A0A0A6YX29 146 aa3.04□□□□□ -1.92
Clcn3-202ENSMUST00000056508 Lce1eQ9D139 143 aa3.03□□□□□ -1.92
Clcn3-202ENSMUST00000056508 Crct1Q6PAI5 102 aa3.03□□□□□ -1.92
Clcn3-202ENSMUST00000056508 Krtap8-1O08633 61 aa3.02□□□□□ -1.93
Clcn3-202ENSMUST00000056508 Sprr2fO70557 76 aa3.02□□□□□ -1.93
Clcn3-202ENSMUST00000056508 HydinQ80W93 5154 aa3.01□□□□□ -1.93
Clcn3-202ENSMUST00000056508 ApobE9Q414 4505 aa3.01□□□□□ -1.93
Clcn3-202ENSMUST00000056508 Huwe1Q7TMY8 4377 aaKnown RBP3□□□□□ -1.93
Clcn3-202ENSMUST00000056508 Vps13dB1ART2 4390 aa3□□□□□ -1.93
Clcn3-202ENSMUST00000056508 Krtap9-3Q3V2C1 136 aa2.99□□□□□ -1.93
Clcn3-202ENSMUST00000056508 Gm11562A0PK51 136 aa2.98□□□□□ -1.93
Clcn3-202ENSMUST00000056508 Dnah5Q8VHE6 4621 aa2.97□□□□□ -1.93
Clcn3-202ENSMUST00000056508 Abca13Q5SSE9 5034 aa2.96□□□□□ -1.94
Clcn3-202ENSMUST00000056508 Sprr2iO70560 76 aa2.95□□□□□ -1.94
Clcn3-202ENSMUST00000056508 2300003K06RikA2A4M0 262 aa2.93□□□□□ -1.94
Clcn3-202ENSMUST00000056508 Vps13bQ80TY5 3993 aa2.91□□□□□ -1.94
Clcn3-202ENSMUST00000056508 Sprr2kO70562 68 aa2.91□□□□□ -1.94
Clcn3-202ENSMUST00000056508 Pkhd1E9PZ36 4059 aa2.91□□□□□ -1.94
Clcn3-202ENSMUST00000056508 Pkd1O08852 4293 aa2.9□□□□□ -1.95
Clcn3-202ENSMUST00000056508 Gm11559Q9D3H7 191 aa2.9□□□□□ -1.95
Clcn3-202ENSMUST00000056508 Kmt2cQ8BRH4 4903 aa2.87□□□□□ -1.95
Clcn3-202ENSMUST00000056508 Lce3eF8VQJ0 98 aa2.86□□□□□ -1.95
Clcn3-202ENSMUST00000056508 Lce3fQ6PAI4 98 aa2.86□□□□□ -1.95
Clcn3-202ENSMUST00000056508 PlecQ9QXS1 4691 aaKnown RBP2.86□□□□□ -1.95
Clcn3-202ENSMUST00000056508 Birc6O88738 4882 aa2.85□□□□□ -1.95
Clcn3-202ENSMUST00000056508 Herc1E9PZP8 4859 aa2.85□□□□□ -1.95
Clcn3-202ENSMUST00000056508 Lce3aQ497I5 98 aa2.85□□□□□ -1.95
Clcn3-202ENSMUST00000056508 Lrp1bQ9JI18 4599 aa2.85□□□□□ -1.95
Clcn3-202ENSMUST00000056508 A030014E15RikA0A1Y7VJV2 120 aa2.83□□□□□ -1.96
Clcn3-202ENSMUST00000056508 SacsQ9JLC8 4582 aa2.82□□□□□ -1.96
Clcn3-202ENSMUST00000056508 Fat2Q5F226 4351 aa2.81□□□□□ -1.96
Clcn3-202ENSMUST00000056508 Lce3dE9Q8V1 98 aa2.81□□□□□ -1.96
Clcn3-202ENSMUST00000056508 Pkhd1l1Q80ZA4 4249 aa2.79□□□□□ -1.96
Clcn3-202ENSMUST00000056508 Ryr2E9Q401 4966 aaKnown RBP2.79□□□□□ -1.96
Clcn3-202ENSMUST00000056508 Lrp1Q91ZX7 4545 aaKnown RBP2.75□□□□□ -1.97
Clcn3-202ENSMUST00000056508 Kiaa1109A2AAE1 5005 aa2.72□□□□□ -1.97
Clcn3-202ENSMUST00000056508 Dnhd1D3Z2X2 4750 aa2.72□□□□□ -1.97
Clcn3-202ENSMUST00000056508 Gm11568A2A4M2 211 aa2.72□□□□□ -1.97
Clcn3-202ENSMUST00000056508 Fat1A0A1L1SQU7 4645 aa2.72□□□□□ -1.97
Clcn3-202ENSMUST00000056508 Mycbp2Q7TPH6 4711 aa2.7□□□□□ -1.98
Clcn3-202ENSMUST00000056508 Ubr4A2AN08 5180 aa2.7□□□□□ -1.98
Clcn3-202ENSMUST00000056508 Krtap9-1Q64526 186 aa2.68□□□□□ -1.98
Clcn3-202ENSMUST00000056508 Sprr2gO70558 76 aa2.68□□□□□ -1.98
Clcn3-202ENSMUST00000056508 Herc2Q4U2R1 4836 aa2.66□□□□□ -1.98
Clcn3-202ENSMUST00000056508 Dync1h1Q9JHU4 4644 aaKnown RBP2.66□□□□□ -1.98
Clcn3-202ENSMUST00000056508 Krtap19-2Q925I0 141 aa2.65□□□□□ -1.99
Clcn3-202ENSMUST00000056508 Fat3Q8BNA6 4555 aa2.64□□□□□ -1.99
Clcn3-202ENSMUST00000056508 Sprr2hO70559 108 aa2.63□□□□□ -1.99
Clcn3-202ENSMUST00000056508 Krtap19-4Q925H7 84 aa2.61□□□□□ -1.99
Clcn3-202ENSMUST00000056508 Krtap22-2J3QNX6 67 aa2.61□□□□□ -1.99
Clcn3-202ENSMUST00000056508 Lrp2A2ARV4 4660 aa2.58□□□□□ -2
Clcn3-202ENSMUST00000056508 Fat4Q2PZL6 4981 aa2.56□□□□□ -2
Clcn3-202ENSMUST00000056508 Hmcn2A2AJ76 5100 aa2.55□□□□□ -2
Retrieved 100 of 22,080 RNA–protein pairs in 104.3 ms