RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	GMPS	P49915	693 aa	Predicted RBP	12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	LARP1B	Q659C4	914 aa	Known RBP	12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	SYNE3	Q6ZMZ3	975 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	TMTC2	Q8N394	836 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	CHMP4C	Q96CF2	233 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	MTA3	Q9BTC8	594 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	MYOZ2	Q9NPC6	264 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	ZNF70	Q9UC06	446 aa	Predicted RBP	12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	SERPINB13	Q9UIV8	391 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	ZNF541	Q9H0D2	1346 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	CDK5RAP2	Q96SN8	1893 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	PTPDC1	A2A3K4	754 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	WNT10B	O00744	389 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	CPLX1	O14810	134 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	STX6	O43752	255 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	BRD1	O95696	1058 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	LMNB1	P20700	586 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	GABPA	Q06546	454 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	FOXD4L3	Q6VB84	417 aa	Predicted RBP	12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	SAMD7	Q7Z3H4	446 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	CMTR1	Q8N1G2	835 aa	Known RBP	12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	SMARCC2	Q8TAQ2	1214 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	VEZT	Q9HBM0	779 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	ZNF287	Q9HBT7	754 aa		12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	FAM217B	Q9NTX9	383 aa	Predicted RBP	12.25	□□□□□ -0.45
NECAP1-223	ENST00000640091	GOLGA8A	A7E2F4	631 aa		12.24	□□□□□ -0.45
NECAP1-223	ENST00000640091	HLA-DOA	P06340	250 aa		12.24	□□□□□ -0.45
NECAP1-223	ENST00000640091	RCSD1	Q6JBY9	416 aa		12.24	□□□□□ -0.45
NECAP1-223	ENST00000640091	ZNF654	Q8IZM8	581 aa		12.24	□□□□□ -0.45
NECAP1-223	ENST00000640091	CCDC82	Q8N4S0	544 aa		12.24	□□□□□ -0.45
NECAP1-223	ENST00000640091	LLPH	Q9BRT6	129 aa	Known RBP	12.24	□□□□□ -0.45
NECAP1-223	ENST00000640091	CNOT7	Q9UIV1	285 aa	Known RBP	12.24	□□□□□ -0.45
NECAP1-223	ENST00000640091	TAOK2	Q9UL54	1235 aa		12.24	□□□□□ -0.45
NECAP1-223	ENST00000640091	NAV1	Q8NEY1	1877 aa		12.24	□□□□□ -0.45
NECAP1-223	ENST00000640091	DHX16	O60231	1041 aa	Known RBP	12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	FDPS	P14324	419 aa	Known RBP	12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	FOSB	P53539	338 aa		12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	MICALL2	Q8IY33	904 aa		12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	FAM184A	Q8NB25	1140 aa		12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	PI4KB	Q9UBF8	816 aa		12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	STX8	Q9UNK0	236 aa		12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	VPS37C	A5D8V6	355 aa	Predicted RBP	12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	SPDYE2	Q495Y8	402 aa		12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	FANCB	Q8NB91	859 aa		12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	PHKB	Q93100	1093 aa		12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	DHX36	Q9H2U1	1008 aa	Known RBP	12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	DNAJC18	Q9H819	358 aa		12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	TMOD2	Q9NZR1	351 aa		12.23	□□□□□ -0.45
NECAP1-223	ENST00000640091	MYH1	P12882	1939 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	ARFGEF1	Q9Y6D6	1849 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	LAMB1	P07942	1786 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	ENTPD3	O75355	529 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	AKR1B1	P15121	316 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	RPS12	P25398	132 aa	Known RBP	12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	SHMT1	P34896	483 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	CATIP	Q7Z7H3	387 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	MTMR14	Q8NCE2	650 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	MTMR7	Q9Y216	660 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	MTMR6	Q9Y217	621 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	PSME4	Q14997	1843 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	WDR33	Q9C0J8	1336 aa	Known RBP	12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	UBE2Q2L	H0YL09	131 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	MYO1B	O43795	1136 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	NPM3	O75607	178 aa	Known RBP	12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	ZSCAN22	P10073	491 aa	Predicted RBP	12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	ZNF280A	P59817	542 aa	Predicted RBP	12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	TROAP	Q12815	778 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	NTRK3	Q16288	839 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	DGKH	Q86XP1	1220 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	CDAN1	Q8IWY9	1227 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	NEDD1	Q8NHV4	660 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	DPF2	Q92785	391 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	ZBED3	Q96IU2	234 aa	Predicted RBP	12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	CSRNP1	Q96S65	589 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	RNF181	Q9P0P0	153 aa		12.22	□□□□□ -0.45
NECAP1-223	ENST00000640091	ASTN2	O75129	1339 aa	Predicted RBP	12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	HMGN5	P82970	282 aa	Known RBP	12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	RTN1	Q16799	776 aa		12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	SHROOM1	Q2M3G4	852 aa	Predicted RBP	12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	CDC37L1	Q7L3B6	337 aa		12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	FERMT3	Q86UX7	667 aa		12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	CLEC10A	Q8IUN9	316 aa		12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	CEP95	Q96GE4	821 aa		12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	TMEM39B	Q9GZU3	492 aa		12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	KAT14	Q9H8E8	782 aa		12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	GJB4	Q9NTQ9	266 aa		12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	TCP11L1	Q9NUJ3	509 aa		12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	ORC3	Q9UBD5	711 aa	Predicted RBP	12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	SWAP70	Q9UH65	585 aa		12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	DDX60L	Q5H9U9	1706 aa	Known RBP	12.21	□□□□□ -0.45
NECAP1-223	ENST00000640091	MPHOSPH10	O00566	681 aa	Known RBP	12.2	□□□□□ -0.46
NECAP1-223	ENST00000640091	DDN	O94850	711 aa	Predicted RBP	12.2	□□□□□ -0.46
NECAP1-223	ENST00000640091	BAG4	O95429	457 aa	Known RBP	12.2	□□□□□ -0.46
NECAP1-223	ENST00000640091	PDC	P20941	246 aa		12.2	□□□□□ -0.46
NECAP1-223	ENST00000640091	MCM4	P33991	863 aa		12.2	□□□□□ -0.46
NECAP1-223	ENST00000640091	GUCY1B3	Q02153	619 aa		12.2	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms