RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CCDC129Q6ZRS4 1044 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 SKAP1Q86WV1 359 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 DYNLL2Q96FJ2 89 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 FAM227BQ96M60 508 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 KCNH4Q9UQ05 1017 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 LAMB1P07942 1786 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 A0A0D9SFI3 127 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 TRIM75PA6NK02 468 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 USP17L5A8MUK1 530 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 BTBD19C9JJ37 291 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 ALDH1A1P00352 501 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 SDSP20132 328 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 SHMT1P34896 483 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 NMIQ13287 307 aaPredicted RBP11.79□□□□□ -0.52
CLN3-261ENST00000637686 CERKLQ49MI3 558 aaPredicted RBP11.79□□□□□ -0.52
CLN3-261ENST00000637686 MCMDC2Q4G0Z9 681 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 C12orf60Q5U649 245 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 OTUD7BQ6GQQ9 843 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 GIMAP6Q6P9H5 292 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 AMOTL1Q8IY63 956 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 SLC44A5Q8NCS7 719 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 EPB41L4AQ9HCS5 686 aaPredicted RBP11.79□□□□□ -0.52
CLN3-261ENST00000637686 PRDM10Q9NQV6 1147 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 HELLSQ9NRZ9 838 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 ATAD5Q96QE3 1844 aa11.79□□□□□ -0.52
CLN3-261ENST00000637686 MINDY4BA8MYZ0 360 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 GH2P01242 217 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 ASNSP08243 561 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 TDO2P48775 406 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 SBK1Q52WX2 424 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 COL13A1Q5TAT6 717 aaPredicted RBP11.78□□□□□ -0.52
CLN3-261ENST00000637686 IFNL3Q8IZI9 196 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 FAM43AQ8N2R8 423 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 ZNF280CQ8ND82 737 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 R3HDMLQ9H3Y0 253 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 GINM1Q9NU53 330 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 ARPP21Q9UBL0 812 aaPredicted RBP11.78□□□□□ -0.52
CLN3-261ENST00000637686 ZBTB21Q9ULJ3 1066 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 PHIPQ8WWQ0 1821 aa11.78□□□□□ -0.52
CLN3-261ENST00000637686 A0A0G2JLL6 359 aaPredicted RBP11.77□□□□□ -0.53
CLN3-261ENST00000637686 HIP1O00291 1037 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 CDC45O75419 566 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 CDK8P49336 464 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 SPP2Q13103 211 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 MOGSQ13724 837 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 ABCB5Q2M3G0 1257 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 VPS53Q5VIR6 699 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 FASTKD5Q7L8L6 764 aaKnown RBP11.77□□□□□ -0.53
CLN3-261ENST00000637686 PRRT2Q7Z6L0 340 aaPredicted RBP11.77□□□□□ -0.53
CLN3-261ENST00000637686 STK11IPQ8N1F8 1099 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 CFHR5Q9BXR6 569 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 TBC1D2Q9BYX2 928 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 NACAP1Q9BZK3 213 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 AS3MTQ9HBK9 375 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 CABP5Q9NP86 173 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 SWAP70Q9UH65 585 aa11.77□□□□□ -0.53
CLN3-261ENST00000637686 MPHOSPH10O00566 681 aaKnown RBP11.76□□□□□ -0.53
CLN3-261ENST00000637686 FOXP2O15409 715 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 EPB41L2O43491 1005 aaKnown RBP11.76□□□□□ -0.53
CLN3-261ENST00000637686 CRHR2Q13324 411 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 RAB3GAP1Q15042 981 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 TAF1CQ15572 869 aaPredicted RBP11.76□□□□□ -0.53
CLN3-261ENST00000637686 C8orf34Q49A92 452 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 GPAT2Q6NUI2 795 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 CASC1Q6TDU7 716 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 CWC27Q6UX04 472 aaKnown RBP11.76□□□□□ -0.53
CLN3-261ENST00000637686 GADL1Q6ZQY3 521 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 C16orf86Q6ZW13 317 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 ANKRD23Q86SG2 305 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 ZNF589Q86UQ0 364 aaPredicted RBP11.76□□□□□ -0.53
CLN3-261ENST00000637686 WDR18Q9BV38 432 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 BACH2Q9BYV9 841 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 NAPBQ9H115 298 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 DIAPH3Q9NSV4 1193 aa11.76□□□□□ -0.53
CLN3-261ENST00000637686 GPR25O00155 361 aa11.75□□□□□ -0.53
CLN3-261ENST00000637686 PDHXO00330 501 aa11.75□□□□□ -0.53
CLN3-261ENST00000637686 AKR1B1P15121 316 aa11.75□□□□□ -0.53
CLN3-261ENST00000637686 GUCY1A2P33402 732 aa11.75□□□□□ -0.53
CLN3-261ENST00000637686 HMGCS2P54868 508 aa11.75□□□□□ -0.53
CLN3-261ENST00000637686 DGKZQ13574 1117 aa11.75□□□□□ -0.53
CLN3-261ENST00000637686 MTMR2Q13614 643 aa11.75□□□□□ -0.53
CLN3-261ENST00000637686 ZNF296Q8WUU4 475 aaPredicted RBP11.75□□□□□ -0.53
CLN3-261ENST00000637686 ZFYVE28Q9HCC9 887 aa11.75□□□□□ -0.53
CLN3-261ENST00000637686 TAOK2Q9UL54 1235 aa11.75□□□□□ -0.53
CLN3-261ENST00000637686 CASP8AP2Q9UKL3 1982 aa11.75□□□□□ -0.53
CLN3-261ENST00000637686 CCDC171Q6TFL3 1326 aa11.75□□□□□ -0.53
CLN3-261ENST00000637686 USP17L10C9JJH3 530 aa11.74□□□□□ -0.53
CLN3-261ENST00000637686 HSPD1P10809 573 aaKnown RBP11.74□□□□□ -0.53
CLN3-261ENST00000637686 BACE1P56817 501 aa11.74□□□□□ -0.53
CLN3-261ENST00000637686 PPARAQ07869 468 aa11.74□□□□□ -0.53
CLN3-261ENST00000637686 SEPT2Q15019 361 aa11.74□□□□□ -0.53
CLN3-261ENST00000637686 SH3D19Q5HYK7 790 aa11.74□□□□□ -0.53
CLN3-261ENST00000637686 CCDC17Q96LX7 622 aa11.74□□□□□ -0.53
CLN3-261ENST00000637686 ZCCHC17Q9NP64 241 aaKnown RBP11.74□□□□□ -0.53
CLN3-261ENST00000637686 PTPRFP10586 1907 aa11.74□□□□□ -0.53
CLN3-261ENST00000637686 C19orf81C9J6K1 198 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 FKTNO75072 461 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 FGAP02671 866 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 MFAP1P55081 439 aaKnown RBP11.73□□□□□ -0.53
CLN3-261ENST00000637686 ALX1Q15699 326 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms